View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16567_low_3 (Length: 384)
Name: NF16567_low_3
Description: NF16567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16567_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 24 - 371
Target Start/End: Original strand, 28865313 - 28865654
Alignment:
| Q |
24 |
caattccataatcttctttcttttccttcaacaactctttgataattttaacttcatcacatcactatgagtcactttaacaatcagcaacaaaccccag |
123 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28865313 |
caattccataatcttctttcttttccttcaaaaactctttgataattttaacttcataacatcactatgagtcactttaacaatcagcaacaaaccccag |
28865412 |
T |
|
| Q |
124 |
tatcatatccaccaccaggtgagggttattcatcagcaccatatgtaactgccccaccacctatgggttatccttccaaggatggctctcaagggtaccc |
223 |
Q |
| |
|
||||||||||||||| ||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28865413 |
tatcatatccaccac------aggcttattcttcagctccatatgtaactgccccaccacctatgggttatccttccaaggatggctctcaagggtaccc |
28865506 |
T |
|
| Q |
224 |
tcaacaaaagatttcagaccaaactactagcaagggtgatggtttctggaagggatgttgtgctgctatatgttgctgctgtgcccttgatatatgcttt |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28865507 |
tcaacaaaagatttcagaccaaactactagcaggggtgatggtttctggaagggatgttgtgctgctatatgttgctgctgtgcccttgatatatgcttt |
28865606 |
T |
|
| Q |
324 |
taagttaagattggattattttataccatagattattgttaccacagt |
371 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28865607 |
taagttatgattggattattttataccatagattattgttaccacagt |
28865654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 90 - 371
Target Start/End: Complemental strand, 28862870 - 28862589
Alignment:
| Q |
90 |
atgagtcactttaacaatcagcaacaaaccccagtatcatatccaccaccaggtgagggttattcatcagcaccatatgtaactgccccaccacctatgg |
189 |
Q |
| |
|
|||||| |||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28862870 |
atgagtaacttcaacaatcagcaacaagccccagtatcatatccaccacaaggtgagggttattcttcagcaccatatgtaactgccccaccacctatgg |
28862771 |
T |
|
| Q |
190 |
gttatccttccaaggatggctctcaagggtaccctcaacaaaagatttcagaccaaactactagcaagggtgatggtttctggaagggatgttgtgctgc |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28862770 |
gttatccttccaaggatggctctcaagggtaccctcaacaaaagatttcagaccaaactactagcaggggtgatggtttctggaagggatgttgtgctgc |
28862671 |
T |
|
| Q |
290 |
tatatgttgctgctgtgcccttgatatatgcttttaagttaagattggattattttataccatagattattgttaccacagt |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28862670 |
tatatgttgctgctgtgcccttgatatatgcttttaagttatgattggattattttataccatagattattgttaccacagt |
28862589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 121 - 329
Target Start/End: Original strand, 36059432 - 36059640
Alignment:
| Q |
121 |
cagtatcatatccaccaccaggtgagggttattcatcagcaccatatgtaactgccccaccacctatgggttatccttccaaggatggctctcaagggta |
220 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
36059432 |
cagtatcatatccaccacctggtgaggcctattctacacctcaatatgtaactgccccaccacctatgggttatccttccaaggatggctctgcagggta |
36059531 |
T |
|
| Q |
221 |
ccctcaacaaaagatttcagaccaaactactagcaagggtgatggtttctggaagggatgttgtgctgctatatgttgctgctgtgcccttgatatatgc |
320 |
Q |
| |
|
||| ||||||| |||| |||||||||| ||||||| |||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||| ||| |
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| T |
36059532 |
cccccaacaaaggattccagaccaaaccactagcaggggtgatggtttctggaaaggatgttgtgctgctctatgttgctgttgtgcccttgatatctgc |
36059631 |
T |
|
| Q |
321 |
ttttaagtt |
329 |
Q |
| |
|
||||||||| |
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|
| T |
36059632 |
ttttaagtt |
36059640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 102 - 328
Target Start/End: Original strand, 15099419 - 15099648
Alignment:
| Q |
102 |
aacaatcagcaacaaaccccagtatcatatccaccaccaggtgagggttattcatcagcaccatatgtaactgccccaccacctatgggttatccttcca |
201 |
Q |
| |
|
|||||||| |||||| |||| ||||||||||||||||||||||| ||||| || | |||||||| ||||||||||||||||||||||| ||| | | |
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|
| T |
15099419 |
aacaatcatcaacaagcccctatatcatatccaccaccaggtgagacctattctacatctccatatgttactgccccaccacctatgggttaccctacaa |
15099518 |
T |
|
| Q |
202 |
aggatggctc---tcaagggtaccctcaacaaaagatttcagaccaaactactagcaagggtgatggtttctggaagggatgttgtgctgctatatgttg |
298 |
Q |
| |
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| ||||| | | |||| |||||| | |||| |||| |||||||||| |||| || ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
15099519 |
aagatggtccagctgaaggataccctaaccaaaggattccagaccaaaccactaccagaggtgatggtttctggaagggatgttgtgctgctctatgttg |
15099618 |
T |
|
| Q |
299 |
ctgctgtgcccttgatatatgcttttaagt |
328 |
Q |
| |
|
||||||||| ||||||| ||||||||||| |
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|
| T |
15099619 |
ttgctgtgccattgatatttgcttttaagt |
15099648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 102 - 328
Target Start/End: Original strand, 15110654 - 15110883
Alignment:
| Q |
102 |
aacaatcagcaacaaaccccagtatcatatccaccaccaggtgagggttattcatcagcaccatatgtaactgccccaccacctatgggttatccttcca |
201 |
Q |
| |
|
|||||||| |||||| |||| ||||||||||||||||||||||| ||||| || | |||||||| ||||||||||||||||||||||| ||| | | |
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| T |
15110654 |
aacaatcatcaacaagcccctatatcatatccaccaccaggtgagacctattctacatctccatatgttactgccccaccacctatgggttaccctacaa |
15110753 |
T |
|
| Q |
202 |
aggatggctc---tcaagggtaccctcaacaaaagatttcagaccaaactactagcaagggtgatggtttctggaagggatgttgtgctgctatatgttg |
298 |
Q |
| |
|
| ||||| | | |||| |||||| | |||| |||| ||||||||| |||| || ||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
15110754 |
aagatggtccagctgaaggataccctaaccaaaggattccagaccaaagcactaccagaggtgatggtttctggaagggatgttgtgctgctctatgttg |
15110853 |
T |
|
| Q |
299 |
ctgctgtgcccttgatatatgcttttaagt |
328 |
Q |
| |
|
||||||||| ||||||| ||||||||||| |
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|
| T |
15110854 |
ttgctgtgccattgatatttgcttttaagt |
15110883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 102 - 328
Target Start/End: Complemental strand, 18617030 - 18616801
Alignment:
| Q |
102 |
aacaatcagcaacaaaccccagtatcatatccaccaccaggtgagggttattcatcagcaccatatgtaactgccccaccacctatgggttatccttcca |
201 |
Q |
| |
|
|||||||| |||||| |||| ||||||||||||||||||||||| ||||| || | |||||||| ||||||||||||||||||||||| ||| | | |
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|
| T |
18617030 |
aacaatcatcaacaagcccctatatcatatccaccaccaggtgagacctattctacatctccatatgttactgccccaccacctatgggttaccctacaa |
18616931 |
T |
|
| Q |
202 |
aggatggctc---tcaagggtaccctcaacaaaagatttcagaccaaactactagcaagggtgatggtttctggaagggatgttgtgctgctatatgttg |
298 |
Q |
| |
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| ||||| | | |||| |||||| | |||| |||| ||||||||| |||| || ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
18616930 |
aagatggtccagctgaaggataccctaaccaaaggattccagaccaaagcactaccagaggtgatggtttctggaagggatgttgtgctgctctatgttg |
18616831 |
T |
|
| Q |
299 |
ctgctgtgcccttgatatatgcttttaagt |
328 |
Q |
| |
|
||||||||| ||||||| ||||||||||| |
|
|
| T |
18616830 |
ttgctgtgccattgatatttgcttttaagt |
18616801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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