View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16568_high_2 (Length: 316)
Name: NF16568_high_2
Description: NF16568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16568_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 20 - 300
Target Start/End: Complemental strand, 6635838 - 6635558
Alignment:
| Q |
20 |
catcactgagccagaagaagacaccgaacatgacactgacacatatatctgctccgaggaagcagtccatgtggcaatgacattagacacgacatatatc |
119 |
Q |
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| T |
6635838 |
catcactgagccagaagaagacaccgaacatgacactggcacatatatctgctccgaggaagcagtccatgtggcaatgacattagacacaacatatatc |
6635739 |
T |
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| Q |
120 |
cgaggatccatggctgcaatcctctctgtcctccaacactcatcatgtccacaaaacatcatctttcactttgtttgttcctcaaacacttcacttctcc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6635738 |
cgaggatccatggctgcaatcctctctgtcctccaacactcatcatgtccacaaaacatcatctttcactttgtttgttcctcaaacacttcacttctcc |
6635639 |
T |
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| Q |
220 |
actccataatctcaaaatcattcccatacctcaaattccaagtctacaattttgatgattcaatcgtttcgggtttaatct |
300 |
Q |
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| T |
6635638 |
actccataatctcaaaatcattcccatacctcaaattccaagtctacaattttgatgattcaatcgtttcgggtttaatct |
6635558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 206
Target Start/End: Complemental strand, 52164667 - 52164544
Alignment:
| Q |
83 |
agtccatgtggcaatgacattagacacgacatatatccgaggatccatggctgcaatcctctctgtcctccaacactcatcatgtccacaaaacatcatc |
182 |
Q |
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|||||| || ||||||||| | ||||| ||||||||||||||||||||||| |||||| | || |||||||||| |||||||||||||||||||| || |
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| T |
52164667 |
agtccaagtagcaatgacactcgacacaacatatatccgaggatccatggcagcaatcttatcaatcctccaacattcatcatgtccacaaaacatattc |
52164568 |
T |
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| Q |
183 |
tttcactttgtttgttcctcaaac |
206 |
Q |
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| T |
52164567 |
ttccacttcgtttgttcatcaaac |
52164544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 190
Target Start/End: Complemental strand, 7267102 - 7266981
Alignment:
| Q |
69 |
tgctccgaggaagcagtccatgtggcaatgacattagacacgacatatatccgaggatccatggctgcaatcctctctgtcctccaacactcatcatgtc |
168 |
Q |
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||||| || |||||||||||||| ||||||||| |||||| | ||| |||| || || ||||| || || ||||| |||||||||||||| || |||| |
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| T |
7267102 |
tgctcagacgaagcagtccatgttgcaatgacactagacataaaatacctccgcggctcaatggcggccattctctccgtcctccaacactcctcttgtc |
7267003 |
T |
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| Q |
169 |
cacaaaacatcatctttcactt |
190 |
Q |
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|| |||||| |||||| ||||| |
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| T |
7267002 |
cagaaaacaccatcttccactt |
7266981 |
T |
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