View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16568_high_5 (Length: 234)
Name: NF16568_high_5
Description: NF16568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16568_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 14086350 - 14086559
Alignment:
| Q |
1 |
tgacctcatttgaccgcaattctcaccaatttcaaggatcgatacacgaccaaaatttatgtgattcacaagatatgaagccaaatgcagcatgttataa |
100 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14086350 |
tgaccttatttgaccgcaattctcaacaatttcaaggatcgatacacgaccaaaatttatgtgattcacaagatatgaagccaaatgcagaatgttataa |
14086449 |
T |
|
| Q |
101 |
ttacaacatattttttcaaaccaagcataaacaatgaaagagaaaggtctcatgctagcttttggtgtgattgagaacaccgacgtaaagtcaaaaactc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14086450 |
ttacaacatattttttcaaaccaagcataaacaatgaaagagaaaggtctcatgctagcttttggtgtgattgagaacaccgacgtaaagtcaaaaactc |
14086549 |
T |
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| Q |
201 |
gatcctaaat |
210 |
Q |
| |
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|||||||||| |
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| T |
14086550 |
gatcctaaat |
14086559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 14079807 - 14079911
Alignment:
| Q |
105 |
aacatattttttcaaaccaagcataaacaatgaaagagaaaggtctcatgctagcttttggtgtgattgagaacaccgacgtaaagtcaaaaactcgatc |
204 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14079807 |
aacatattttttcaaaccaagcataaacaatgaaagataaaggtctc-tgctagcttttggtgtgattgagaacaccgacgtaaagtcaaaaactcgatc |
14079905 |
T |
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| Q |
205 |
ctaaat |
210 |
Q |
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|||||| |
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| T |
14079906 |
ctaaat |
14079911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 102 - 209
Target Start/End: Original strand, 14094960 - 14095068
Alignment:
| Q |
102 |
tacaacatattttttcaaaccaagcataaacaatgaa--agagaaaggtctcatgctagcttttggtgtgattgagaacaccgacgtaaagtcaaaaact |
199 |
Q |
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||||||||||||||||| ||||||||||||||||||| ||||||||| ||| |||||||||| | |||||||||||||||||| || ||||| |||||| |
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| T |
14094960 |
tacaacatattttttcataccaagcataaacaatgaattagagaaagggctc-tgctagctttcgttgtgattgagaacaccgaagttaagtccaaaact |
14095058 |
T |
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| Q |
200 |
cgatcctaaa |
209 |
Q |
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|||| ||||| |
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| T |
14095059 |
cgattctaaa |
14095068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 14107251 - 14107350
Alignment:
| Q |
8 |
atttgaccgcaattctcaccaatttcaaggatcgatacacgacca-aaatttatgtgattcacaagatatgaagccaaatgcagcatgttataattacaa |
106 |
Q |
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| T |
14107251 |
atttgacctcaattctcacaaatatcaaggatcgatacaagaccacaaatgtatgtgattcgcaagatatgaagccaaatgcagaatggtatacttacaa |
14107350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 14091618 - 14091697
Alignment:
| Q |
8 |
atttgaccgcaattctcaccaatttcaaggatcgatacacgaccaaaatttatgtgattcacaagatatgaagccaaatg |
87 |
Q |
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| T |
14091618 |
atttgactgcaattctcagtaatatcaaggatcgctacacaaccacaatttatgtgattcgtaatatatgcagccaaatg |
14091697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 14103291 - 14103368
Alignment:
| Q |
9 |
tttgaccgcaattctcaccaatttcaaggatcgatacacgaccaaaatttatgtgattcacaagatatgaagccaaat |
86 |
Q |
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||||| ||||||||||| | || |||||||| | ||||| |||||||||| |||| || |||||||||||||||||| |
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| T |
14103291 |
tttgaacgcaattctcaacgatatcaaggattgctacacagccaaaatttaagtgactcgcaagatatgaagccaaat |
14103368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 14086309 - 14086349
Alignment:
| Q |
1 |
tgacctcatttgaccgcaattctcaccaatttcaaggatcg |
41 |
Q |
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| T |
14086309 |
tgaccttatttgaccacaattctcaccaatttcaaggatcg |
14086349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 14129272 - 14129348
Alignment:
| Q |
10 |
ttgaccgcaattctcaccaatttcaaggatcgatacacgaccaaaatttatgtgattcacaagatatgaagccaaat |
86 |
Q |
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||||| |||||||||| ||| | || || || ||||||||||||||||| || | ||||||||||||||||||||| |
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| T |
14129272 |
ttgactgcaattctcagaaatatgaaagagcgctacacgaccaaaatttaagtaactcacaagatatgaagccaaat |
14129348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 14117709 - 14117788
Alignment:
| Q |
8 |
atttgaccgcaattctcaccaatttcaaggatcgatacacgaccaaaatttatgtgattcacaagatatgaagccaaatg |
87 |
Q |
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||||||||||||| |||| ||| |||||||| | ||||| | || ||||||| |||||| ||||||||||||| ||||| |
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| T |
14117709 |
atttgaccgcaatactcatgaatatcaaggattgctacactaacacaatttatatgattcgcaagatatgaagcgaaatg |
14117788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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