View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16568_low_1 (Length: 593)

Name: NF16568_low_1
Description: NF16568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16568_low_1
NF16568_low_1
[»] chr1 (5 HSPs)
chr1 (311-576)||(34339594-34339859)
chr1 (1-265)||(34336345-34336609)
chr1 (147-293)||(35562276-35562422)
chr1 (260-307)||(34339504-34339551)
chr1 (6-69)||(23992095-23992160)
[»] chr7 (10 HSPs)
chr7 (2-304)||(25212849-25213153)
chr7 (2-304)||(25216392-25216696)
chr7 (1-293)||(5484144-5484438)
chr7 (2-293)||(42470304-42470597)
chr7 (2-293)||(28427514-28427802)
chr7 (318-573)||(28427198-28427452)
chr7 (314-573)||(42469987-42470245)
chr7 (355-576)||(5265729-5265948)
chr7 (378-478)||(25201079-25201178)
chr7 (2-52)||(25760013-25760063)
[»] chr6 (3 HSPs)
chr6 (14-304)||(8326915-8327206)
chr6 (336-573)||(8326610-8326846)
chr6 (480-576)||(30026362-30026458)
[»] chr8 (2 HSPs)
chr8 (2-293)||(6931078-6931371)
chr8 (336-573)||(6931452-6931688)
[»] chr2 (5 HSPs)
chr2 (452-576)||(17161111-17161235)
chr2 (147-293)||(17161477-17161623)
chr2 (326-398)||(12298160-12298232)
chr2 (511-573)||(39169570-39169632)
chr2 (353-413)||(17161258-17161318)
[»] chr3 (1 HSPs)
chr3 (102-259)||(20226155-20226312)
[»] chr4 (2 HSPs)
chr4 (2-93)||(44258346-44258439)
chr4 (2-93)||(49609020-49609112)
[»] chr5 (1 HSPs)
chr5 (1-54)||(28447666-28447719)


Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 311 - 576
Target Start/End: Original strand, 34339594 - 34339859
Alignment:
Q  311 cttgatttggaggattgaccgacgggtggaggcaaaaggatcacacatccttggcacacgggcaggaaaacaaagcatgtaccatatattcactaccttc 410  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34339594 cttgatttggaggattgaccgactggtggaggcaaaaggatcacacatccttagcacacgggcaggaaaacaaagcatgtaccatatattcactaccttc 34339693  T
Q  411 attcgagatagggcataagttagaatagataaagattatgggacaataaaacggacatgaaaggaacaaagtcgtggcataattgtcaatagaagaagta 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34339694 attcgagatagggcataagttagaatagataaagattatgggacaataaaacggacatgaaaggaacaaagtcgtggcataattgtcaatagaagaagta 34339793  T
Q  511 aatatttgaaggaacacatagtcgcgaaattcaattccaactttcttccccgagcaacgaagtatg 576  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34339794 tatatttgaaggaacacatagtcgcgaaattcaattccaactttcttccccgagcaacgaagtatg 34339859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 34336345 - 34336609
Alignment:
Q  1 gaagaaaccatgcaaaaaagaacatgtatgatcacggataagaccatcaaaatcccaagttagaatcgaagaacacactaccatcaatattaatagaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  34336345 gaagaaaccatgcaaaaaagaacatgtatgatcacggataagaccatcaaaatcccaagttagaatcgaaaaacacactaccatcaatattaatagaaac 34336444  T
Q  101 tgaatccttattagattgtagccaagtgacaatacgagcaagctattgaacaatgtgagaggtaggataaacagaagctatcaagacatgatacagaagc 200  Q
    ||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||     
T  34336445 tgaatccatattagatcgtagccaagtgacaatacaagcaagctattgaacaatgtgagaggtaggataaacaaaagctatcaagacatgatacacaagt 34336544  T
Q  201 gataacacttgagtgctaatttcttggacataatgcttggtatccataaagatacatttattatg 265  Q
    |||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  34336545 gataacacctgagtgctaatttcttggacataatgcttgatatccttaaagatacatttattatg 34336609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 147 - 293
Target Start/End: Complemental strand, 35562422 - 35562276
Alignment:
Q  147 tgaacaatgtgagaggtaggataaacagaagctatcaagacatgatacagaagcgataacacttgagtgctaatttcttggacataatgcttggtatcca 246  Q
    |||||| ||||||||||||||| | || ||||| |||||| || ||  |||   ||||||||| |||||| ||||||||| ||| |||| ||| |||||     
T  35562422 tgaacattgtgagaggtaggatgagcaaaagctttcaagatataattgagagatgataacactcgagtgccaatttcttgaacaaaatgtttgatatcct 35562323  T
Q  247 taaagatacatttattatgagaacaccaaatcttccacatgataatg 293  Q
     |||||||||||| ||  |||||||||||||||||||  ||||||||    
T  35562322 caaagatacatttgttgcgagaacaccaaatcttccaagtgataatg 35562276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 260 - 307
Target Start/End: Original strand, 34339504 - 34339551
Alignment:
Q  260 attatgagaacaccaaatcttccacatgataatgtgtccaatggggcc 307  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34339504 attatgagaacaccaaatcttccacatgataatgtgtccgatggggcc 34339551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 23992095 - 23992160
Alignment:
Q  6 aaccatgcaaaaaagaacatgtatgatcacggataagaccatcaaaa--tcccaagttagaatcga 69  Q
    ||||||||||||||||||||||| ||||||| ||||||||| |||||  ||||||||| |||||||    
T  23992095 aaccatgcaaaaaagaacatgtacgatcacgaataagaccaccaaaacctcccaagttggaatcga 23992160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 6e-48; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 2 - 304
Target Start/End: Complemental strand, 25213153 - 25212849
Alignment:
Q  2 aagaaaccatgcaaaaaagaacatgtatgatcacggataagaccatcaaaatccca--agttagaatcgaagaacacactaccatcaatattaatagaaa 99  Q
    |||||||||||||||||| |||||||||||||||| ||||||||| ||||||| |   |||| ||||||| ||||||| ||||||||| ||||| ||  |    
T  25213153 aagaaaccatgcaaaaaataacatgtatgatcacgaataagaccaccaaaatctcctgagttggaatcgaggaacacattaccatcaacattaagagcta 25213054  T
Q  100 ttgaatccttattagattgtagccaagtgacaatacgagcaagctattgaacaatgtgagaggtaggataaacagaagctatcaagacatgatacagaag 199  Q
     ||||||  || ||| |  | | ||| |||||||||| ||| |||  ||||||||||||||| |||||||| || |  || ||||||| |||| |||||     
T  25213053 ctgaatctatactagctcattgtcaactgacaatacgtgcaggctgctgaacaatgtgagagataggataagcaaacactttcaagacgtgatgcagaaa 25212954  T
Q  200 cgataacacttgagtgctaatttcttggacataatgcttggtatccataaagatacatttattatgagaacaccaaatcttccacatgataatgtgtcca 299  Q
     |||||||||| | ||| |||||||||| ||||||||||| |||||  ||||||| |||| ||   |||||||||||||||||||||||||||| |||||    
T  25212953 tgataacactttattgccaatttcttgggcataatgcttgatatcctcaaagatatatttgttgcaagaacaccaaatcttccacatgataatgagtcca 25212854  T
Q  300 atggg 304  Q
    |||||    
T  25212853 atggg 25212849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 2 - 304
Target Start/End: Complemental strand, 25216696 - 25216392
Alignment:
Q  2 aagaaaccatgcaaaaaagaacatgtatgatcacggataagaccatcaaaatccca--agttagaatcgaagaacacactaccatcaatattaatagaaa 99  Q
    |||||||||||||||||| |||||||||||||||| ||||||||| ||||||| |   |||| ||||||| ||||||| ||||||||| ||||| ||  |    
T  25216696 aagaaaccatgcaaaaaataacatgtatgatcacgaataagaccaccaaaatctcctgagttggaatcgaggaacacattaccatcaacattaagagcta 25216597  T
Q  100 ttgaatccttattagattgtagccaagtgacaatacgagcaagctattgaacaatgtgagaggtaggataaacagaagctatcaagacatgatacagaag 199  Q
     ||||||  || ||| |  | | ||| |||||||||| ||| |||  ||||||||||||||| |||||||| || |  || ||||||| |||| |||||     
T  25216596 ctgaatctatactagctcattgtcaactgacaatacgtgcaggctgctgaacaatgtgagagataggataagcaaacactttcaagacgtgatgcagaaa 25216497  T
Q  200 cgataacacttgagtgctaatttcttggacataatgcttggtatccataaagatacatttattatgagaacaccaaatcttccacatgataatgtgtcca 299  Q
     |||||||||| | ||| |||||||||| ||||||||||| |||||  ||||||| |||| ||   |||||||||||||||||||||||||||| |||||    
T  25216496 tgataacactttattgccaatttcttgggcataatgcttgatatcctcaaagatatatttgttgcaagaacaccaaatcttccacatgataatgagtcca 25216397  T
Q  300 atggg 304  Q
    |||||    
T  25216396 atggg 25216392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 5484144 - 5484438
Alignment:
Q  1 gaagaaaccatgcaaaaaagaacatgtatgatcacggataagaccatcaaaa--tcccaagttagaatcgaagaacacactaccatcaatattaatagaa 98  Q
    ||||||||||||||||||||||| ||||||||| || ||||||||| |||||  ||||||||| ||||| | ||| ||| | ||||||| ||||| ||      
T  5484144 gaagaaaccatgcaaaaaagaacttgtatgatcccgaataagaccaccaaaacttcccaagttggaatcaaggaatacattgccatcaacattaagagct 5484243  T
Q  99 attgaatccttattagattgtagccaagtgacaatacgagcaagctattgaacaatgtgagaggtaggataaacagaagctatcaagacatgatacagaa 198  Q
    | ||||| | || |||   || ||||| |||||||||| ||| |||  |||||| ||||||||||||||| | || ||||| |||||| ||||| ||||     
T  5484244 actgaattcatactaggacgttgccaactgacaatacgtgcaggctgctgaacactgtgagaggtaggatgagcaaaagctttcaagatatgatgcagag 5484343  T
Q  199 gcgataacacttgagtgctaatttcttggacataatgcttggtatccataaagatacatttattatgagaacaccaaatcttccacatgataatg 293  Q
      ||||||||||||| || ||||||||||| | |||| ||| |||||  |||||||||||| ||  ||||||||||||||||||| |||||||||    
T  5484344 aagataacacttgagcgccaatttcttggatagaatgtttgatatcctcaaagatacatttgttgcgagaacaccaaatcttccaaatgataatg 5484438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 2 - 293
Target Start/End: Complemental strand, 42470597 - 42470304
Alignment:
Q  2 aagaaaccatgcaaaaaagaacatgtatgatcacggataagaccatcaaaa--tcccaagttagaatcgaagaacacactaccatcaatattaatagaaa 99  Q
    |||||||||||||||||||||| ||||||||| || ||||||||| |||||  ||||||||| ||||| | ||| ||||| ||||||| ||||| ||  |    
T  42470597 aagaaaccatgcaaaaaagaacctgtatgatcccgaataagaccaccaaaacctcccaagttggaatcaaggaatacactgccatcaacattaagagcta 42470498  T
Q  100 ttgaatccttattagattgtagccaagtgacaatacgagcaagctattgaacaatgtgagaggtaggataaacagaagctatcaagacatgatacagaag 199  Q
     ||||| | || |||  ||| ||||| |||||||||| ||| |||  |||||| | ||||||||||||| | || ||||| |||||| ||||| ||||      
T  42470497 ctgaattcatactaggatgttgccaactgacaatacgtgcaggctgctgaacactatgagaggtaggatgagcaaaagctttcaagatatgatgcagaga 42470398  T
Q  200 cgataacacttgagtgctaatttcttggacataatgcttggtatccataaagatacatttattatgagaacaccaaatcttccacatgataatg 293  Q
     ||||||||||||| || ||||||||||||| |||||||| |||||  |||||||||||| ||  || || |||||||||| || |||||||||    
T  42470397 agataacacttgagcgccaatttcttggacaaaatgcttgatatcctcaaagatacatttgttgcgacaataccaaatctttcaaatgataatg 42470304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 2 - 293
Target Start/End: Complemental strand, 28427802 - 28427514
Alignment:
Q  2 aagaaaccatgcaaaaaagaacatgtatgatcacggataagaccatcaaaa--tcccaagttagaatcgaagaacacactaccatcaatattaatagaaa 99  Q
    ||||||||||||||||| |||| ||||||||| || ||||||||| |||||  ||||||||| ||||| | ||| ||||| ||||||| ||||| ||  |    
T  28427802 aagaaaccatgcaaaaa-gaacctgtatgatcccgaataagaccaccaaaacctcccaagttggaatcaaggaatacactgccatcaacattaagagcta 28427704  T
Q  100 ttgaatccttattagattgtagccaagtgacaatacgagcaagctattgaacaatgtgagaggtaggataaacagaagctatcaagacatgatacagaag 199  Q
     ||||| | || |||   || |||||    ||||||| ||| |||  |||||| ||||||||||||||| | || ||||| |||||| ||||| ||||      
T  28427703 ctgaattcatactaggacgttgccaa----caatacgtgcaggctgctgaacactgtgagaggtaggatgagcaaaagctttcaagatatgatgcagaga 28427608  T
Q  200 cgataacacttgagtgctaatttcttggacataatgcttggtatccataaagatacatttattatgagaacaccaaatcttccacatgataatg 293  Q
     |||||||||||||||||||||||||||||| |||||||| |||||  |||||||||||| ||  ||||||||||||||||||| |||||||||    
T  28427607 agataacacttgagtgctaatttcttggacagaatgcttgatatcctcaaagatacatttgttgcgagaacaccaaatcttccaaatgataatg 28427514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 318 - 573
Target Start/End: Complemental strand, 28427452 - 28427198
Alignment:
Q  318 tggaggattgaccgacgggtggaggcaaaaggatcacacatccttggcacacgggcaggaaaacaaagcatgtaccatatattcactaccttcattcgag 417  Q
    ||||||| ||||||||  |||||| |||||||| ||||| |||||||||| |||||| || ||||||||||| | ||||| ||||||||||| |||  |     
T  28427452 tggaggagtgaccgacttgtggagacaaaaggaccacacttccttggcacgcgggcaagagaacaaagcatgaaacatatcttcactaccttgattacaa 28427353  T
Q  418 atagggcataagttagaatagataaagattatgggacaataaaacggacatgaaaggaacaaagtcgtggcataattgtcaatagaagaagtaaatattt 517  Q
    |||||||||| || |||| |||| ||||||| |  | |||||||||||| |||| |||||| |||| ||||| ||||| ||  |||| || | |||||||    
T  28427352 atagggcataggtcagaagagat-aagattacgatataataaaacggacctgaagggaacagagtcatggcacaattgccataagaaaaattgaatattt 28427254  T
Q  518 gaaggaacacatagtcgcgaaattcaattccaactttcttccccgagcaacgaagt 573  Q
    ||||||||||| || ||  |||| |||||||||||||||||||| ||||| |||||    
T  28427253 gaaggaacacaaaggcgtcaaatccaattccaactttcttccccaagcaatgaagt 28427198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 314 - 573
Target Start/End: Complemental strand, 42470245 - 42469987
Alignment:
Q  314 gatttggaggattgaccgacgggtggaggcaaaaggatcacacatccttggcacacgggcaggaaaacaaagcatgtaccatatattcactaccttcatt 413  Q
    ||||||||||| ||||||||  |||||| |||||||| | |||||||||||||| ||||||||| ||||||||| | | ||||| ||||||||||| |||    
T  42470245 gatttggaggagtgaccgacttgtggagacaaaaggaccgcacatccttggcacgcgggcaggagaacaaagcaggaaacatattttcactaccttaatt 42470146  T
Q  414 cgagatagggcataagttagaatagataaagattatgggacaataaaacggacatgaaaggaacaaagtcgtggcataattgtcaatagaagaagtaaat 513  Q
      | |||||||||| || |||| |||| ||||||| |  ||||||||||| || |||| |||||| |||| ||||| | ||| ||  |||| |  | |||    
T  42470145 acaaatagggcataggtcagaagagat-aagattacgatacaataaaacgaacctgaatggaacagagtcatggcacacttgccataagaaaatttgaat 42470047  T
Q  514 atttgaaggaacacatagtcgcgaaattcaattccaactttcttccccgagcaacgaagt 573  Q
    ||||||||||||||| || ||| |||| |||||||||||||||||||| ||||| |||||    
T  42470046 atttgaaggaacacaaaggcgccaaatccaattccaactttcttccccaagcaatgaagt 42469987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 355 - 576
Target Start/End: Complemental strand, 5265948 - 5265729
Alignment:
Q  355 acatccttggcacacgggcaggaaaacaaagcatgtaccatatattcactaccttcattcgagatagggcataagttagaatagataaagattatgggac 454  Q
    ||||||||||||  || | | |||||||||||||||| ||||| ||||||||||| |||  | ||||||||||||||| || | |||| ||||| | |||    
T  5265948 acatccttggcatgcgagtaagaaaacaaagcatgtaacatatcttcactaccttgattacaaatagggcataagttaaaagatataa-gattacgcgac 5265850  T
Q  455 aataaaacggacatgaaaggaacaaagtcgtggcataattgtcaatagaagaagtaaatatttgaaggaacacatagtcgcgaaattcaattccaacttt 554  Q
    |||||||| || ||||| ||||||||||| || || ||| | ||  ||||||| |||||||||||||||||||| || ||  |||| |||||||||| ||    
T  5265849 aataaaacagatatgaagggaacaaagtcatgacacaat-gccacaagaagaactaaatatttgaaggaacacaaagacgtcaaatccaattccaacctt 5265751  T
Q  555 cttccccgagcaacgaagtatg 576  Q
    |||||  ||||||| |||||||    
T  5265750 cttccatgagcaacaaagtatg 5265729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 478
Target Start/End: Complemental strand, 25201178 - 25201079
Alignment:
Q  378 aaacaaagcatgtaccatatattcactaccttcattcgagatagggcataagttagaatagataaagattatgggacaataaaacggacatgaaaggaac 477  Q
    |||||||||||||| ||||| ||||||||||| |||  | || || |||||||||||| |||| ||||||| | ||||||||||  ||| |||| |||||    
T  25201178 aaacaaagcatgtaacatatcttcactaccttgattacaaattggacataagttagaagagat-aagattacgagacaataaaatagacttgaagggaac 25201080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 25760013 - 25760063
Alignment:
Q  2 aagaaaccatgcaaaaaagaacatgtatgatcacggataagaccatcaaaa 52  Q
    |||||||||||||||||||||| |||| || |||| ||||||||| |||||    
T  25760013 aagaaaccatgcaaaaaagaacctgtaagaccacgaataagaccaccaaaa 25760063  T

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Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 14 - 304
Target Start/End: Complemental strand, 8327206 - 8326915
Alignment:
Q  14 aaaaaagaacatgtatgatcacggataagaccatcaaaa--tcccaagttagaatcgaagaacacactaccatcaatattaatagaaattgaatccttat 111  Q
    ||||||||||| ||||||||||  ||||||||  |||||  ||||||||| || |||| |||||||| | |||||| ||||| ||  |  |||||| ||     
T  8327206 aaaaaagaaca-gtatgatcacaaataagaccgccaaaacctcccaagttggactcgaggaacacacaagcatcaacattaagagctacagaatccatac 8327108  T
Q  112 tagattgtagccaagtgacaatacgagcaagctattgaacaatgtgagaggtaggataaacagaagctatcaagacatgatacagaagcgataacacttg 211  Q
    ||||| || ||||| | |||||| | | | |||  ||||| ||||||||||||||||||  | ||| | |||||||||||| |||||  |||||||||||    
T  8327107 tagatcgttgccaactaacaatatgcggaggctgctgaactatgtgagaggtaggataagaaaaagttttcaagacatgatgcagaaatgataacacttg 8327008  T
Q  212 agtgctaatttcttggacataatgcttggtatccataaagatacatttattatgagaacaccaaatcttccacatgataatgtgtccaatggg 304  Q
    ||||| ||||||||||||| |||||||| ||| |  |||||||||||| || |||||||||||||||||||||||||||||| ||||||||||    
T  8327007 agtgccaatttcttggacaaaatgcttgatattctcaaagatacatttgttgtgagaacaccaaatcttccacatgataatgggtccaatggg 8326915  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 336 - 573
Target Start/End: Complemental strand, 8326846 - 8326610
Alignment:
Q  336 gtggaggcaaaaggatcacacatccttggcacacgggcaggaaaacaaagcatgtaccatatattcactaccttcattcgagatagggcataagttagaa 435  Q
    |||||| |||||||| ||||| |||||||||| || |||||||||||||||||||| ||||| || ||||| || |||  | ||||| ||||||||||||    
T  8326846 gtggagacaaaaggaccacacgtccttggcacgcgtgcaggaaaacaaagcatgtaacatatcttgactacgttgattacaaataggacataagttagaa 8326747  T
Q  436 tagataaagattatgggacaataaaacggacatgaaaggaacaaagtcgtggcataattgtcaatagaagaagtaaatatttgaaggaacacatagtcgc 535  Q
     | || |||||||    |||||||||  ||  ||||| ||||| ||||| | || ||||||||  ||||||  | ||||||||||||| |||| || ||     
T  8326746 gatat-aagattacaaaacaataaaatagatctgaaatgaacatagtcgcgtcacaattgtcataagaagagcttaatatttgaaggagcacaaagacgt 8326648  T
Q  536 gaaattcaattccaactttcttccccgagcaacgaagt 573  Q
    ||||| ||||| |||||||||| |||||| ||||||||    
T  8326647 gaaatccaatttcaactttctttcccgaggaacgaagt 8326610  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 480 - 576
Target Start/End: Complemental strand, 30026458 - 30026362
Alignment:
Q  480 agtcgtggcataattgtcaatagaagaagtaaatatttgaaggaacacatagtcgcgaaattcaattccaactttcttccccgagcaacgaagtatg 576  Q
    ||||||| ||||||| |||  ||||||| |  ||||| ||| ||||||| || ||| |||| ||||||||||||||||  | |||||||||||||||    
T  30026458 agtcgtgtcataattatcataagaagaattggatattggaaagaacacaaaggcgccaaatccaattccaactttcttttctgagcaacgaagtatg 30026362  T

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Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 2 - 293
Target Start/End: Original strand, 6931078 - 6931371
Alignment:
Q  2 aagaaaccatgcaaaaaagaacatgtatgatcacggataagaccatcaaaa--tcccaagttagaatcgaagaacacactaccatcaatattaatagaaa 99  Q
    |||||||||||||||||||||||||||||||| || ||||||||| |||||  ||||||||| ||||| | ||| ||||| ||||||| ||||| ||  |    
T  6931078 aagaaaccatgcaaaaaagaacatgtatgatcccgaataagaccaccaaaacctcccaagttggaatcaaggaatacactgccatcaacattaagagcta 6931177  T
Q  100 ttgaatccttattagattgtagccaagtgacaatacgagcaagctattgaacaatgtgagaggtaggataaacagaagctatcaagacatgatacagaag 199  Q
     ||||| | || ||    || ||||| ||| |||||| ||| |||  |||||| ||||||||||||||| | || ||||| |||||| ||| | ||||      
T  6931178 ctgaattcatactattacgttgccaactgataatacgtgcaggctgctgaacactgtgagaggtaggatgagcaaaagctttcaagatatggtgcagaga 6931277  T
Q  200 cgataacacttgagtgctaatttcttggacataatgcttggtatccataaagatacatttattatgagaacaccaaatcttccacatgataatg 293  Q
     |||||||||||||  | ||||||||||||| |||||||| |||||  |||||||||||| ||  ||||||||||||||||||| |||||||||    
T  6931278 agataacacttgagcaccaatttcttggacagaatgcttgatatcctcaaagatacatttgttgcgagaacaccaaatcttccaaatgataatg 6931371  T

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Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 336 - 573
Target Start/End: Original strand, 6931452 - 6931688
Alignment:
Q  336 gtggaggcaaaaggatcacacatccttggcacacgggcaggaaaacaaagcatgtaccatatattcactaccttcattcgagatagggcataagttagaa 435  Q
    |||||| |||||||| ||||| |||||||||| ||||||||| ||||||||||| | ||||| ||||||||||| |||  | |||||||||| || ||||    
T  6931452 gtggagacaaaaggaccacacgtccttggcacgcgggcaggagaacaaagcatgaaacatatcttcactaccttgattacaaatagggcataggtcagaa 6931551  T
Q  436 tagataaagattatgggacaataaaacggacatgaaaggaacaaagtcgtggcataattgtcaatagaagaagtaaatatttgaaggaacacatagtcgc 535  Q
     ||||||  |||| |  |||||||||||||| |||| |||||| |||| || || ||||| ||  |||| || | |||||||||||||||||| || |||    
T  6931552 gagataat-attacgatacaataaaacggacctgaagggaacagagtcatgacacaattgccataagaaaaattgaatatttgaaggaacacaaaggcgc 6931650  T
Q  536 gaaattcaattccaactttcttccccgagcaacgaagt 573  Q
     |||| |||||||||||||||||||| ||||| |||||    
T  6931651 caaatccaattccaactttcttccccaagcaatgaagt 6931688  T

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Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 452 - 576
Target Start/End: Complemental strand, 17161235 - 17161111
Alignment:
Q  452 gacaataaaacggacatgaaaggaacaaagtcgtggcataattgtcaatagaagaagtaaatatttgaaggaacacatagtcgcgaaattcaattccaac 551  Q
    ||||||||||| ||| |||| |||||| ||||||| || ||||| ||  |||||||   |||||||||||||||||| ||  || |||| ||||||||||    
T  17161235 gacaataaaacagacctgaagggaacagagtcgtgacacaattgccataagaagaaccgaatatttgaaggaacacagaggtgccaaatccaattccaac 17161136  T
Q  552 tttcttccccgagcaacgaagtatg 576  Q
    |||||||||||||||| ||||||||    
T  17161135 tttcttccccgagcaatgaagtatg 17161111  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 147 - 293
Target Start/End: Complemental strand, 17161623 - 17161477
Alignment:
Q  147 tgaacaatgtgagaggtaggataaacagaagctatcaagacatgatacagaagcgataacacttgagtgctaatttcttggacataatgcttggtatcca 246  Q
    |||||| |||||||| |||||||| || | ||| |||||| ||||| ||||    |||||||||||||| |||||||||||| | |||| ||| |||||     
T  17161623 tgaacattgtgagagataggataagcaaatgctttcaagatatgatgcagagataataacacttgagtgttaatttcttggatagaatggttgatatcct 17161524  T
Q  247 taaagatacatttattatgagaacaccaaatcttccacatgataatg 293  Q
     ||||||| |||| ||  |||||||| ||||||||||||||||||||    
T  17161523 caaagatatatttgttgcgagaacacaaaatcttccacatgataatg 17161477  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 326 - 398
Target Start/End: Original strand, 12298160 - 12298232
Alignment:
Q  326 tgaccgacgggtggaggcaaaaggatcacacatccttggcacacgggcaggaaaacaaagcatgtaccatata 398  Q
    |||||||| ||||||| |||||||| ||||| |||||||||||  | ||||||||||||||||||| ||||||    
T  12298160 tgaccgactggtggagacaaaaggaccacacgtccttggcacatagacaggaaaacaaagcatgtaacatata 12298232  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 511 - 573
Target Start/End: Complemental strand, 39169632 - 39169570
Alignment:
Q  511 aatatttgaaggaacacatagtcgcgaaattcaattccaactttcttccccgagcaacgaagt 573  Q
    |||||||||||||||||| || ||| || | |||||||||||||||||||| ||||| |||||    
T  39169632 aatatttgaaggaacacaaaggcgccaattccaattccaactttcttccccaagcaatgaagt 39169570  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 353 - 413
Target Start/End: Complemental strand, 17161318 - 17161258
Alignment:
Q  353 acacatccttggcacacgggcaggaaaacaaagcatgtaccatatattcactaccttcatt 413  Q
    |||| ||||| |||| |||||||| | |||||||||||| ||||| ||||||||||| |||    
T  17161318 acacgtcctttgcacgcgggcagggatacaaagcatgtaacatatcttcactaccttgatt 17161258  T

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Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 102 - 259
Target Start/End: Original strand, 20226155 - 20226312
Alignment:
Q  102 gaatccttattagattgtagccaagtgacaatacgagcaagctattgaacaatgtgagaggtaggataaacagaagctatcaagacatgatacagaagcg 201  Q
    |||||| |||||| | ||||| | ||||||||| | |||  ||  |||||||| ||||||||||||||| || ||||| |||||||||||| || |||      
T  20226155 gaatccatattaggtcgtagctacgtgacaatatgtgcagactgctgaacaatatgagaggtaggataagcaaaagctttcaagacatgatgcataagaa 20226254  T
Q  202 ataacacttgagtgctaatttcttggacataatgcttggtatccataaagatacattt 259  Q
    |||||| |||||||  ||| |||| ||||||||||||| ||| |  ||||||||||||    
T  20226255 ataacaattgagtgtcaatatcttagacataatgcttgatattctcaaagatacattt 20226312  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 44258439 - 44258346
Alignment:
Q  2 aagaaaccatgcaaaaaagaacatgtatgatcacggataagaccatcaaaa--tcccaagttagaatcgaagaacacactaccatcaatattaa 93  Q
    |||||||||||||||||||||| ||||||||| || ||||||||| |||||  ||||||||| ||||| | ||| ||| ||||||||| |||||    
T  44258439 aagaaaccatgcaaaaaagaacctgtatgatcccgaataagaccaccaaaacctcccaagttggaatcaaggaatacattaccatcaacattaa 44258346  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 49609020 - 49609112
Alignment:
Q  2 aagaaaccatgcaaaaaagaacatgtatgatcacggataagaccatcaaaa--tcccaagttagaatcgaagaacacactaccatcaatattaa 93  Q
    |||||||||||||||||||||| ||||||||| || ||||||||| |||||  ||||||||| ||||  | ||| ||||| ||||||| |||||    
T  49609020 aagaaaccatgcaaaaaagaacctgtatgatc-cgaataagaccaccaaaacctcccaagttggaattaaggaatacactgccatcaacattaa 49609112  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 28447719 - 28447666
Alignment:
Q  1 gaagaaaccatgcaaaaaagaacatgtatgatcacggataagaccatcaaaatc 54  Q
    ||||||||||||||||||||||||||||| ||| || |||||||||||||||||    
T  28447719 gaagaaaccatgcaaaaaagaacatgtataatcccgaataagaccatcaaaatc 28447666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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