View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16568_low_10 (Length: 265)
Name: NF16568_low_10
Description: NF16568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16568_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 40647955 - 40647716
Alignment:
| Q |
11 |
caaaggcagcaaaaggcaatgcttcagaaaactcaagactagtaataacaattttactcatctggcttctcaacgccttacgttcttgaagttgtttggc |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||| ||| |
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| T |
40647955 |
caaaagcagcaaaaggcaatgcttcagaaaactcaagactagtaataacaattttactcatctggcttctcaatgccttacgttcttgtaattgttcggc |
40647856 |
T |
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| Q |
111 |
ttccattgtctgttcagctgatacacttttggttttccaatctaacaaagctgaagaatcggttttaacacttgagagtgagctctttccatgagaagaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40647855 |
ttccattgtctgttcagctgatacacttttggttttccaatctaacaaagctgaagaatcggttttaacacttgagagtgagctctttccatgagaagaa |
40647756 |
T |
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| Q |
211 |
gctatggtggcgagcatgttgttagcttggatgtcattgg |
250 |
Q |
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| T |
40647755 |
gctatggtggcgagcatgttgttagcttggatgtcattgg |
40647716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 40635994 - 40635753
Alignment:
| Q |
9 |
agcaaaggcagcaaaaggcaatgcttcagaaaactcaagactagtaataacaattttactcatctggcttctcaacgccttacgttcttgaagttgtttg |
108 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||| | | | |||| |
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| T |
40635994 |
agcaaaagcagcaaaaggcaatgcttcagaaaactcaagactagtgatagcaattttactcatctggcttctcaacaccttacgtacaggtaattgtcct |
40635895 |
T |
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| Q |
109 |
gcttccattgtctgttcagctgatacacttttggttttccaatctaacaaagctgaagaatcggttttaacacttgagagtgagctctttccatgagaag |
208 |
Q |
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| T |
40635894 |
tcttcctttgtctgttcagctgatacacttttggttttccaatctaacaaagctgaagaatcggttttaacacttgagagtgagctctttccatgagagg |
40635795 |
T |
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| Q |
209 |
aagctatggtggcgagcatgttgttagcttggatgtcattgg |
250 |
Q |
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| T |
40635794 |
cggctatggtagcgagcatgttgtttgcttggatgtcattgg |
40635753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 16862028 - 16861967
Alignment:
| Q |
9 |
agcaaaggcagcaaaaggcaatgcttcagaaaactcaagactagtaataacaattttactca |
70 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| ||| | |||||||||| |
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| T |
16862028 |
agcaaaagcagcaaaaggcaatgcttcagaaaactcaagactagtgatagccattttactca |
16861967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 4780134 - 4780199
Alignment:
| Q |
10 |
gcaaaggcagcaaaaggcaatgcttcagaaaactcaagactagtaataacaattttactcatctgg |
75 |
Q |
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||||| ||||||||||| | ||| ||||| || ||||||||||| ||| |||||||||||| |||| |
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| T |
4780134 |
gcaaaagcagcaaaaggaagtgcctcagagaattcaagactagtgatagcaattttactcaactgg |
4780199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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