View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16568_low_12 (Length: 206)
Name: NF16568_low_12
Description: NF16568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16568_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 1792342 - 1792234
Alignment:
| Q |
17 |
aatgagaagcgtacttagagagatgtgggattgtaaagacttgagtacttacttttaaaggcaaagatgattggtggtcaaaggaaagaagcttgttaag |
116 |
Q |
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| T |
1792342 |
aatgagaagcgtacttagagagatgtgggattgtagagacttgagtactt----ttaaaggcaaagatgattggtggtcaaaggaaagaagcttgttaag |
1792247 |
T |
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| Q |
117 |
acgattttttgag |
129 |
Q |
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|| |||||||||| |
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| T |
1792246 |
acaattttttgag |
1792234 |
T |
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Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 121 - 195
Target Start/End: Complemental strand, 1791842 - 1791768
Alignment:
| Q |
121 |
ttttttgagtgaaaactcattttcaatctttaagaaaattgcatatatgaaatagaaaactgcatatagtataat |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
1791842 |
ttttttgagtgaaaactcattttcaatctttaagaaaactgcatatatgaaatagaaaactgcatatattataat |
1791768 |
T |
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