View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16568_low_2 (Length: 456)
Name: NF16568_low_2
Description: NF16568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16568_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 15 - 439
Target Start/End: Complemental strand, 49684981 - 49684554
Alignment:
| Q |
15 |
aatatatttaaccgaaaatgaaccgccaaataaccaacaagtactagcaattcaacagcttgaacttgttcagtaatgcgttgtttttcttttcttatta |
114 |
Q |
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|||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
49684981 |
aatatatttaaccgaaaaagaaccgccaaataatcaacaagtactagcaattcaacggcttgaacttgttcagtaatgcattgtttttcttttcttatta |
49684882 |
T |
|
| Q |
115 |
agaaagtgcaaaactatgtatatcgtttttcatcttttaaaactaattccagtagtttcagtttctgatcaaattaagttaaagccaaaaccctaaagct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49684881 |
agaaagtgcaaaactatgtatatcgtttttcatcttttaaaactaattccagtagtttcagtttctgatcaaattaagttaaagccaaaaccctaaagct |
49684782 |
T |
|
| Q |
215 |
attatcatcaccaacagcaccactgctgaacatagagctaccctttacctc---ttctcctctagggacgactttcctttgctattacgaacaagcagaa |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49684781 |
attatcatcaccaacagcaccactgctgaacatagagctaccctttacctcttcttctcctctagggacgactttcctttgctattacgaacaggcagaa |
49684682 |
T |
|
| Q |
312 |
tgggtgcattcttcgcaagtcacaaatgttgaactatgctcaggtaattctaattccttgtaactcaattactactaggactatttataagagaatgaac |
411 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
49684681 |
tggatgcattcttcgcaagtcacaaatgttgaactatgctcaggtaattctaattccttgtaactaaattactactaggactatttatacgagaatgaac |
49684582 |
T |
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| Q |
412 |
tgaaataaaatttgataatgtagtacat |
439 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
49684581 |
tgaaataaaatttgataatgtagtacat |
49684554 |
T |
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