View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16568_low_3 (Length: 456)
Name: NF16568_low_3
Description: NF16568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16568_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 49486821 - 49487163
Alignment:
| Q |
1 |
aacaaaaacaagagaaggaaagttgctgtgtattcatacctactgcccatgttgttcatgctatgtttcttgacgtgtcttctgatttgtaaactgcgat |
100 |
Q |
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| T |
49486821 |
aacaaaaacaagagaaggaaagttgctgtgtattcatacctactgcccatgctgttcatgctatgtttcttgacgtgtcttctgatttgtaaactgcgat |
49486920 |
T |
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| Q |
101 |
taattagcttccactactattttatgaatgaaacatcatgta-taattatatcgtgttggagtttggaattcatcaaaagaagttctcaagaaaatagaa |
199 |
Q |
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| T |
49486921 |
taattagcttccactactattttatgaatgaaacatcatgtattaattatatcgtgttggagtttggaattcatcaaaagaagttctcaagaaaatagaa |
49487020 |
T |
|
| Q |
200 |
ctgagaacaaaaaagaccaagacccgaaggcacatagaccaagtcaaacatatactgtactagacgtggcaagcaacaaaacaagtcattcatcaattgg |
299 |
Q |
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| T |
49487021 |
ctgagaacaaaaaagaccaagacccgaaggcacatagaccaagtcaaacatatactgtactagacgtggcaagc-----aacaagtcattcatcaattgg |
49487115 |
T |
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| Q |
300 |
aggaatactattcttattgtagtagatatcctatttcatccggagtac |
347 |
Q |
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| T |
49487116 |
aggaatactattcttattgtagtagatattctatttcatccggagtac |
49487163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 346 - 439
Target Start/End: Original strand, 49487185 - 49487282
Alignment:
| Q |
346 |
acttccaaaaatctcggaatgaagatagacgataatccact----ctgcctttgggtgcttccccaaatttccaatttcttgtggaagtggttatgtt |
439 |
Q |
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| T |
49487185 |
acttccaaaaatctcggaatgaagatagacgataatccactcactctgcctttgggtgcttccccaaatttccaatttcttgtggaagtggttatgtt |
49487282 |
T |
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