View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16568_low_4 (Length: 413)
Name: NF16568_low_4
Description: NF16568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16568_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 15 - 394
Target Start/End: Original strand, 48593045 - 48593424
Alignment:
| Q |
15 |
atcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtcca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48593045 |
atcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtcca |
48593144 |
T |
|
| Q |
115 |
aaccttccttatatacatgctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatggaagattgtgtggttgatg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48593145 |
aaccttccttatatacatgctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatggaagattgtgtggttgatg |
48593244 |
T |
|
| Q |
215 |
gtaacatgattccgaaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccattagagtttagaccagaaag |
314 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
48593245 |
gtaacatgattctgaaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccattagagtttaggccagaaag |
48593344 |
T |
|
| Q |
315 |
gtttttagaaaacaaagatattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggagaggttgtc |
394 |
Q |
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| T |
48593345 |
gtttttagaaaacaaagatattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggagaggttgtc |
48593424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 15 - 394
Target Start/End: Original strand, 48597656 - 48598035
Alignment:
| Q |
15 |
atcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtcca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48597656 |
atcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtcca |
48597755 |
T |
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| Q |
115 |
aaccttccttatatacatgctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatggaagattgtgtggttgatg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48597756 |
aaccttccttatatacatgctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatggaagattgtgtggttgatg |
48597855 |
T |
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| Q |
215 |
gtaacatgattccgaaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccattagagtttagaccagaaag |
314 |
Q |
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| T |
48597856 |
gtaacatgattctgaaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccattagagtttaggccagaaag |
48597955 |
T |
|
| Q |
315 |
gtttttagaaaacaaagatattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggagaggttgtc |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48597956 |
gtttttagaaaacaaagatattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggagaggttgtc |
48598035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 389
Target Start/End: Complemental strand, 23231213 - 23230830
Alignment:
| Q |
15 |
atcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtcca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||||||||| || | |||| ||||||||||| | ||||||||||||||| ||||| |
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| T |
23231213 |
atcagaactgtttaacaatccaagggtgttgaaaaaagctcaagaggaggtagagagagttgtaggaaaggaaagattagtgtgtgaagaagacagtcca |
23231114 |
T |
|
| Q |
115 |
aaccttccttatatacatgctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatggaagattgtgtggttgatg |
214 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
23231113 |
aaccttccttatatacatgccatcataaaagaaaccatgaggcttcaccctccgataccgatgattatgaggaaaggaatggaagattgtgttgttgatg |
23231014 |
T |
|
| Q |
215 |
gtaacatgattccgaaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccattagagtttagaccagaaag |
314 |
Q |
| |
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|||| ||| |||| ||||| |||||||||||||| |||||||||||||||| ||| |||| ||||||||||||||| ||||||| |||| |||||||| |
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| T |
23231013 |
gtaaaatggttccaaaaggatcaatggtttgtgtgaacatttgggctatgggaagagaccaaaagatatgggaaaatgcattagattttaagccagaaag |
23230914 |
T |
|
| Q |
315 |
gtttttagaaaacaaag---------atattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggagagg |
389 |
Q |
| |
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||||||||||||||||| |||| || ||||||||||| || | ||||||| | ||||||||||||||||||||||| |
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| T |
23230913 |
gtttttagaaaacaaagaaggaaacaatatagatatgaaagggcatcactatgagttgctaccatttggttctggaaggagagg |
23230830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 17 - 392
Target Start/End: Complemental strand, 23223466 - 23223082
Alignment:
| Q |
17 |
cagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtccaaa |
116 |
Q |
| |
|
|||||||||| |||||||||| || ||||| ||||||||||| |||||||| | | | | | ||||||||||| || ||||||| |||| |||||| |
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| T |
23223466 |
cagaactgttcaacaatccaatagtactgaagaaagcacaagaagaggtggagagaataatagggaaggaaagactagtatgtgaagcagacattccaaa |
23223367 |
T |
|
| Q |
117 |
ccttccttatatacatgctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatggaagattgtgtggttgatggt |
216 |
Q |
| |
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||||||||||||||| || || |||||||||||| |||||||||| || || ||||||||||| ||||| |||| ||||||||||||| ||||| |
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| T |
23223366 |
ccttccttatatacaagccattataaaagaaacattgaggcttcacccaccactaccgatgattgctaggaaaggaacaaaagattgtgtggtcgatggg |
23223267 |
T |
|
| Q |
217 |
aacatgattccgaaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccattagagtttagaccagaaaggt |
316 |
Q |
| |
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|| ||||| ||||||||||| |||||||| |||||||||||||| | ||||||| |||||| ||| |||||||| |||||||||| || ||||||| |
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| T |
23223266 |
aaaatgatcaaaaaaggctcaatagtttgtgtgaacatttgggctattggaagggactcaaagacttggaaaaacccactagagtttaggcctgaaaggt |
23223167 |
T |
|
| Q |
317 |
ttttagaa-----aacaaa----gatattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggagaggttg |
392 |
Q |
| |
|
|||||||| || | | || || || || |||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
23223166 |
ttttagaatctggaaaagagagtgagatagatatcaaagggcatgactttgagttgttgccatttggttctggaaggagaggttg |
23223082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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