View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16568_low_5 (Length: 323)
Name: NF16568_low_5
Description: NF16568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16568_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 40882059 - 40881912
Alignment:
| Q |
16 |
tctacaacattaggaagatcggtgcgtggcttgtagttaccataaaaggtgcccttaagagtcctttcatgtaacaaattcatagggtgagttttgaatg |
115 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
40882059 |
tctacaacattaggaagatcggtgcggggtttgtagtttccataaaaggtacccttaagagtcctttcattcaacaaattcataggatgagttttgaatg |
40881960 |
T |
|
| Q |
116 |
catcatctttgtttggcactccaacaagtaaaacaacaccccaaccct |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
40881959 |
catcatctttgtttggcactccaacaagtacagcaacaccccaaccct |
40881912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 40900761 - 40900614
Alignment:
| Q |
16 |
tctacaacattaggaagatcggtgcgtggcttgtagttaccataaaaggtgcccttaagagtcctttcatgtaacaaattcatagggtgagttttgaatg |
115 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| || ||||| |||| |
|
|
| T |
40900761 |
tctacaacattaggaagatcggtgcgaggcttgtagttaccataaaaggtacccttaagagtcctttcattcaacaaattcataggatgtgttttaaatg |
40900662 |
T |
|
| Q |
116 |
catcatctttgtttggcactccaacaagtaaaacaacaccccaaccct |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
40900661 |
catcatctttgtttggcactccaacaagtacagcaacaccccaaccct |
40900614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 40905315 - 40905168
Alignment:
| Q |
16 |
tctacaacattaggaagatcggtgcgtggcttgtagttaccataaaaggtgcccttaagagtcctttcatgtaacaaattcatagggtgagttttgaatg |
115 |
Q |
| |
|
|||||||||||||||||||| ||||| || |||||||| |||||||| || ||||||||||||||||||| |||||||||||||| || |||| |||| |
|
|
| T |
40905315 |
tctacaacattaggaagatcagtgcggggtttgtagtttccataaaatgtacccttaagagtcctttcattcaacaaattcataggatgtgtttgaaatg |
40905216 |
T |
|
| Q |
116 |
catcatctttgtttggcactccaacaagtaaaacaacaccccaaccct |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
40905215 |
catcatctttgtttggcactccaacaagtacagcaacaccccaaccct |
40905168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 309
Target Start/End: Original strand, 32572464 - 32572583
Alignment:
| Q |
193 |
tttttgtgcaaattaaccctcggccgctgtgctaacatggtgcatattcaaagaacaactcgtcactg---ccgccgagcaaactaaccctgcgccgcca |
289 |
Q |
| |
|
||||| ||||||| ||||||| ||||| |||||||||||||| |||| ||||||| ||| || | | |||||||||||||||||||| |||||| |
|
|
| T |
32572464 |
tttttatgcaaataaaccctctgccgccatgctaacatggtgcttattggaagaacagctcctcgccgccaccgccgagcaaactaaccctctgccgccg |
32572563 |
T |
|
| Q |
290 |
ggaaaacattgtgctcattc |
309 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
32572564 |
tgaaaacattgtgttcattc |
32572583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 191 - 308
Target Start/End: Original strand, 31071166 - 31071283
Alignment:
| Q |
191 |
cgtttttgtgcaaattaaccctcggccgctgtgctaacatggtgcatattcaaagaacaactcgtcactgccgccgagcaaactaaccctgcgccgccag |
290 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||| |||| |||||| ||||| | |
|
|
| T |
31071166 |
cgtttttatgcaaactaaccctcggccgctgtgctaacatggtgcatattcgaagaacaactagtcaccgccgccgagtaaacgaaccctccgccgtcgt |
31071265 |
T |
|
| Q |
291 |
gaaaacattgtgctcatt |
308 |
Q |
| |
|
|||||| ||||| ||||| |
|
|
| T |
31071266 |
gaaaacgttgtgttcatt |
31071283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 191 - 309
Target Start/End: Original strand, 40322377 - 40322495
Alignment:
| Q |
191 |
cgtttttgtgcaaattaaccctcggccgctgtgctaacatggtgcatattcaaagaacaactcgtcactgccgccgagcaaactaaccctgcgccgccag |
290 |
Q |
| |
|
|||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||||||||||||| | | ||||||| |||| |||||| ||||||| |
|
|
| T |
40322377 |
cgtttttgtgcaaagtaaccctcagccgccgtgctaacatggtgcatattcgaagaacaactcgtcgccgtcgccgagtaaaccaaccctccgccgccgt |
40322476 |
T |
|
| Q |
291 |
gaaaacattgtgctcattc |
309 |
Q |
| |
|
|||||| ||||| |||||| |
|
|
| T |
40322477 |
gaaaacgttgtgttcattc |
40322495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 192 - 302
Target Start/End: Complemental strand, 32927783 - 32927673
Alignment:
| Q |
192 |
gtttttgtgcaaattaaccctcggccgctgtgctaacatggtgcatattcaaagaacaactcgtcactgccgccgagcaaactaaccctgcgccgccagg |
291 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||| | || |||||||||||||||| ||| || || |
|
|
| T |
32927783 |
gtttttgtgcaaattaaccctcggcctccgtgctaacatggtgcatatttgaagaacaactcgtcgtcgtcgtcgagcaaactaaccctctgccaccggg |
32927684 |
T |
|
| Q |
292 |
aaaacattgtg |
302 |
Q |
| |
|
||||| ||||| |
|
|
| T |
32927683 |
aaaacgttgtg |
32927673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University