View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_high_11 (Length: 555)
Name: NF16569_high_11
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 152 - 545
Target Start/End: Original strand, 40241025 - 40241418
Alignment:
| Q |
152 |
gcacgttatagaacactggtggaacgaatgataattgaacacgtaagtgtgttgtgttttgaaacaaaacatcaaaacgacatcgtacaacatgtgtgtt |
251 |
Q |
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| T |
40241025 |
gcacgttatagaacactggtggaacgaatgataattgaacacgtaagagtgttgtgttttgaaacaaaacatcaaaacgacatcgtagaacttgtgtgtt |
40241124 |
T |
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| Q |
252 |
aaagaaacataaacataataacatcgtcatcgtagatataaatatttattattagttgctgttcaacttcagttttcattttatcttcttcttcttcttt |
351 |
Q |
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| T |
40241125 |
aaagaaacataaacataataacatcgtcatcgtagatataaatatttattattagttgctgttcaacttcagttttcatttta------tcttcttcttt |
40241218 |
T |
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| Q |
352 |
cctccctctctcgccccctttgaaaccaaacctagacaccattttccctttactttctttcttccaattt------cttcgaattttcgttgaattcatc |
445 |
Q |
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| T |
40241219 |
cctccctctctcgccccctttgaaaccaaacctagacaccattttccctttactttctttcttccaatttcttttccttcgaattttcgttgaattcatc |
40241318 |
T |
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| Q |
446 |
actattggatattcccttcagtcaagaagcttctggtgagtttctctttccttttccttatattttatcgtatttaatttttaatttcattgtttctgtg |
545 |
Q |
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| T |
40241319 |
actattggatattcccttcagtcaagaagcttctggtgagtttctctttccttttccttttattttatcgtatttaatttttaatttcattgtttctgtg |
40241418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 40240876 - 40240933
Alignment:
| Q |
24 |
tatacagatatcgatctaggtaggtgtttgtattaatccaggatgcaggtttggtaca |
81 |
Q |
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| T |
40240876 |
tatacagatatcgatctaggtaggtgtttgtattaatccaggatgcaggtttggtaca |
40240933 |
T |
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