View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_high_113 (Length: 207)
Name: NF16569_high_113
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_high_113 |
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Alignment Details
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 16102810 - 16102639
Alignment:
| Q |
15 |
gacctacttgaccatattaaaagcacaatttactatctttgaaacaatttccagactggaaccaactattgcagaaccaaacatactctaacggaaagtg |
114 |
Q |
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| T |
16102810 |
gacctacttaaccatattaaacacaaaatttactatctttgaaacaatttcaagaatggaaccaactattgcagaaccaaaattactctagcggagagtg |
16102711 |
T |
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| Q |
115 |
gattatatatatgatccatgatctaatctacgactctgcatagtgtccaatagtttatctactggatccatc |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||| | |||||| | |||||||| |
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| T |
16102710 |
gattatatatatgatccatgatctaatctacgactctgcatagtgcctaataatctatctattagatccatc |
16102639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 14656080 - 14655964
Alignment:
| Q |
16 |
acctacttgaccatattaaaagcacaatttactatctttgaaacaatttccagactggaaccaactattgcagaaccaaacatactctaacggaaagtgg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||| |||||||| |
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| T |
14656080 |
acctacttgaccatattaaaagcacaatttactatctttgaaacaatttccagagtggaaccaaatattgcagaaccaaaaatactctaacagaaagtgg |
14655981 |
T |
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| Q |
116 |
attatatatatgatcca |
132 |
Q |
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| T |
14655980 |
attatatatatgatcca |
14655964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 27004736 - 27004663
Alignment:
| Q |
15 |
gacctacttgaccatattaaaagcacaatttactatctttgaaacaatttccagactggaaccaactattgcag |
88 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| | | |||||||||||||||||| |
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| T |
27004736 |
gacctacttgaccatattaaacgcacaatttactatctttgaaacaatttcaaaagtggaaccaactattgcag |
27004663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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