View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16569_high_114 (Length: 206)

Name: NF16569_high_114
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16569_high_114
NF16569_high_114
[»] chr4 (3 HSPs)
chr4 (16-191)||(32000851-32001026)
chr4 (16-191)||(31941892-31942067)
chr4 (88-157)||(36246545-36246614)
[»] chr7 (1 HSPs)
chr7 (88-155)||(2950124-2950191)
[»] chr5 (1 HSPs)
chr5 (63-191)||(18478948-18479076)
[»] chr2 (1 HSPs)
chr2 (102-157)||(37881306-37881361)
[»] chr3 (2 HSPs)
chr3 (120-157)||(20732617-20732654)
chr3 (120-157)||(20740353-20740390)
[»] chr8 (3 HSPs)
chr8 (118-154)||(9622097-9622133)
chr8 (124-154)||(7195709-7195739)
chr8 (112-157)||(39916910-39916955)
[»] chr1 (2 HSPs)
chr1 (125-164)||(27632581-27632620)
chr1 (121-176)||(45594286-45594341)


Alignment Details
Target: chr4 (Bit Score: 176; Significance: 5e-95; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 32001026 - 32000851
Alignment:
Q  16 gagtctttggtgtactgagaagtggaacttccaggtgaatgatcctgttttggtttgtgagttgttgggtctattcccattcttgttagtcttttcttga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001026 gagtctttggtgtactgagaagtggaacttccaggtgaatgatcctgttttggtttgtgagttgttgggtctattcccattcttgttagtcttttcttga 32000927  T
Q  116 ggtgtgtgttccagtagttcttgatttcattgtctgttcttcttggaagttgtgctgctattgctgaccatctgtg 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32000926 ggtgtgtgttccagtagttcttgatttcattgtctgttcttcttggaagttgtgctgctattgctgaccatctgtg 32000851  T

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Target: chr4; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 31942067 - 31941892
Alignment:
Q  16 gagtctttggtgtactgagaagtggaacttccaggtgaatgatcctgttttggtttgtgagttgttgggtctattcccattcttgttagtcttttcttga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31942067 gagtctttggtgtactgagaagtggaacttccaggtgaatgatcctgttttggtttgtgagttgttgggtctattcccattcttgttagtcttttcttga 31941968  T
Q  116 ggtgtgtgttccagtagttcttgatttcattgtctgttcttcttggaagttgtgctgctattgctgaccatctgtg 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31941967 ggtgtgtgttccagtagttcttgatttcattgtctgttcttcttggaagttgagctgctattgctgaccatctgtg 31941892  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 36246614 - 36246545
Alignment:
Q  88 attcccattcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttc 157  Q
    ||||||||||||   ||||||||| | | ||| |||||||| || |||||||||||||||||||||||||    
T  36246614 attcccattcttaagagtcttttcctaatgtgagtgttccaataattcttgatttcattgtctgttcttc 36246545  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 88 - 155
Target Start/End: Complemental strand, 2950191 - 2950124
Alignment:
Q  88 attcccattcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttct 155  Q
    ||||||||| | |||| ||||||||| || ||||||||||| ||||||||||||||||| ||||||||    
T  2950191 attcccattttggttaatcttttcttaagatgtgtgttccaatagttcttgatttcattatctgttct 2950124  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 191
Target Start/End: Complemental strand, 18479076 - 18478948
Alignment:
Q  63 ttttggtttgtgagttgttgggtctattcccattcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttcttgga 162  Q
    ||||||||||||||| || || ||||| ||||||||  | ||||||||||||| ||   ||||||| |  ||||| |||||||| |||||||| |||||     
T  18479076 ttttggtttgtgagtggtgggatctatccccattctgatgagtcttttcttgatgttaatgttccaatgattctttatttcattatctgttctccttggc 18478977  T
Q  163 agttgtgctgctattgctgaccatctgtg 191  Q
    ||  | ||||||||||  |||||||||||    
T  18478976 aggagagctgctattgtggaccatctgtg 18478948  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 37881306 - 37881361
Alignment:
Q  102 tagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttc 157  Q
    |||||||||| | | ||| ||||||||||||||||| |||||||||||||||||||    
T  37881306 tagtcttttcctaatgtgcgtgttccagtagttctttatttcattgtctgttcttc 37881361  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 20732617 - 20732654
Alignment:
Q  120 tgtgttccagtagttcttgatttcattgtctgttcttc 157  Q
    |||||||||||||||||| |||||||||||||||||||    
T  20732617 tgtgttccagtagttctttatttcattgtctgttcttc 20732654  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 20740353 - 20740390
Alignment:
Q  120 tgtgttccagtagttcttgatttcattgtctgttcttc 157  Q
    |||||||||||||||||| |||||||||||||||||||    
T  20740353 tgtgttccagtagttctttatttcattgtctgttcttc 20740390  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 9622133 - 9622097
Alignment:
Q  118 tgtgtgttccagtagttcttgatttcattgtctgttc 154  Q
    |||||||||||||||||||| ||||||||||||||||    
T  9622133 tgtgtgttccagtagttctttatttcattgtctgttc 9622097  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 154
Target Start/End: Complemental strand, 7195739 - 7195709
Alignment:
Q  124 ttccagtagttcttgatttcattgtctgttc 154  Q
    |||||||||||||||||||||||||||||||    
T  7195739 ttccagtagttcttgatttcattgtctgttc 7195709  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 39916955 - 39916910
Alignment:
Q  112 ttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttc 157  Q
    |||| ||| |||||||| ||||||||||| ||||||||||||||||    
T  39916955 ttgatgtgagtgttccaatagttcttgatctcattgtctgttcttc 39916910  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 125 - 164
Target Start/End: Original strand, 27632581 - 27632620
Alignment:
Q  125 tccagtagttcttgatttcattgtctgttcttcttggaag 164  Q
    |||| |||||||||||||||||||||||||||| ||||||    
T  27632581 tccaatagttcttgatttcattgtctgttcttcctggaag 27632620  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 45594286 - 45594341
Alignment:
Q  121 gtgttccagtagttcttgatttcattgtctgttcttcttggaagttgtgctgctat 176  Q
    |||||||| |||||||| || |||||||||||||||| ||| ||||| ||||||||    
T  45594286 gtgttccaatagttcttaatctcattgtctgttcttcctggtagttgagctgctat 45594341  T

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