View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_high_118 (Length: 204)
Name: NF16569_high_118
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_high_118 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: scaffold0459 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 5460 - 5633
Alignment:
| Q |
13 |
aagaatggcaaagggaacaacattccagcaattggaatccatgtcactccaaaacaaaccaagaaatacacacattggaagagtgtaaacaatactatat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5460 |
aagaatggcaaagggaacaacattccagcaattggaatccatgtcactccaaaacaaaccaagaaatacacacattggaagagtgtaaacaatactatat |
5559 |
T |
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| Q |
113 |
gtttgaatggtactgactcaacaaaggaagcatgatcaccttccaacaacctgcaaggataggtttggctttag |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5560 |
gtttgaatggtactgactcaacaaaggaagcatgatcaccttccaacaacctgcaaggataggtttggctttag |
5633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 5460 - 5633
Alignment:
| Q |
13 |
aagaatggcaaagggaacaacattccagcaattggaatccatgtcactccaaaacaaaccaagaaatacacacattggaagagtgtaaacaatactatat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5460 |
aagaatggcaaagggaacaacattccagcaattggaatccatgtcactccaaaacaaaccaagaaatacacacattggaagagtgtaaacaatactatat |
5559 |
T |
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| Q |
113 |
gtttgaatggtactgactcaacaaaggaagcatgatcaccttccaacaacctgcaaggataggtttggctttag |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5560 |
gtttgaatggtactgactcaacaaaggaagcatgatcaccttccaacaacctgcaaggataggtttggctttag |
5633 |
T |
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