View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16569_high_120 (Length: 203)

Name: NF16569_high_120
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16569_high_120
NF16569_high_120
[»] chr8 (5 HSPs)
chr8 (1-191)||(44890727-44890925)
chr8 (117-191)||(12233741-12233815)
chr8 (35-98)||(12234201-12234264)
chr8 (46-99)||(44890265-44890317)
chr8 (37-109)||(12233675-12233747)
[»] scaffold0027 (1 HSPs)
scaffold0027 (35-109)||(140230-140304)
[»] chr3 (1 HSPs)
chr3 (35-109)||(35564356-35564430)
[»] chr5 (1 HSPs)
chr5 (36-81)||(17262634-17262679)
[»] chr2 (1 HSPs)
chr2 (35-99)||(10472850-10472912)
[»] chr6 (1 HSPs)
chr6 (30-82)||(21604000-21604052)


Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 44890925 - 44890727
Alignment:
Q  1 tacatgagtattttggccaagtgattcaatgttggaaaattgatcttcacatatgtgtttaacctgaaacacatcagtaaaatattgaaataccccttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44890925 tacatgagtattttggccaagtgattcaatgttggaaaattgatcttcacatatgtgtttaacctgaaacacatcagtaaaatattgaaataccccttca 44890826  T
Q  101 acagt--------taaccgagagtagttaactagcgcggaacttcaaacctgaaattacaaaggatgcacatctgaaacactaaatgaaattcatctca 191  Q
    |||||        ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  44890825 acagttaacaaattaaccgacagtagttaactaccgctgaacttcaaacctgaaattacaaaggatgcagatctgaaacactaaatgaaattcgtctca 44890727  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 117 - 191
Target Start/End: Original strand, 12233741 - 12233815
Alignment:
Q  117 agttaactagcgcggaacttcaaacctgaaattacaaaggatgcacatctgaaacactaaatgaaattcatctca 191  Q
    ||||||||  ||||||||| |||| || |||||| | |||||||| |||||||||| |||||||||||| |||||    
T  12233741 agttaactgccgcggaactccaaatctaaaattatagaggatgcagatctgaaacaataaatgaaattcgtctca 12233815  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 12234264 - 12234201
Alignment:
Q  35 gaaaattgatcttcacatatgtgtttaacctgaaacacatcagtaaaatattgaaatacccctt 98  Q
    |||||||||| |||||| |||||||||| || | ||||| || ||||||| |||||||||||||    
T  12234264 gaaaattgatgttcacacatgtgtttaagcttatacacaccaataaaatactgaaatacccctt 12234201  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 44890265 - 44890317
Alignment:
Q  46 ttcacatatgtgtttaacctgaaacacatcagtaaaatattgaaataccccttc 99  Q
    |||||| |||||||||| ||||||||||| |||||||||  |||||||||||||    
T  44890265 ttcacacatgtgtttaagctgaaacacat-agtaaaatacggaaataccccttc 44890317  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 12233675 - 12233747
Alignment:
Q  37 aaattgatcttcacatatgtgtttaacctgaaacacatcagtaaaatattgaaataccccttcaacagttaac 109  Q
    |||||| | |||||| |||||||||| ||||||||||  | ||||| |  ||||||||||||| |||||||||    
T  12233675 aaattgttgttcacacatgtgtttaagctgaaacacactaataaaagaccgaaataccccttcgacagttaac 12233747  T

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Target: scaffold0027 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 140304 - 140230
Alignment:
Q  35 gaaaattgatcttcacatatgtgtttaacctgaaacacatcagtaaaatattgaaataccccttcaacagttaac 109  Q
    |||||||| | |||||| || ||||||| |||||||||| ||||||||||| ||||||| |||||||||||||||    
T  140304 gaaaattgttgttcacacatatgtttaagctgaaacacaccagtaaaatatcgaaatacaccttcaacagttaac 140230  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 35564430 - 35564356
Alignment:
Q  35 gaaaattgatcttcacatatgtgtttaacctgaaacacatcagtaaaatattgaaataccccttcaacagttaac 109  Q
    |||||||||| || ||| | |||||||| ||||||||||||| |||||||   ||||||||||||  ||||||||    
T  35564430 gaaaattgatgtttacacacgtgtttaagctgaaacacatcaataaaataccaaaataccccttcggcagttaac 35564356  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 17262634 - 17262679
Alignment:
Q  36 aaaattgatcttcacatatgtgtttaacctgaaacacatcagtaaa 81  Q
    ||||||| | |||||| |||||||||| ||||||||||||||||||    
T  17262634 aaaattgttgttcacacatgtgtttaaactgaaacacatcagtaaa 17262679  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 10472912 - 10472850
Alignment:
Q  35 gaaaattgatcttcacatatgtgtttaacctgaaacacatcagtaaaatattgaaataccccttc 99  Q
    |||||||| | |||||||||||  |||| |||||||||| ||||||||||  |||||||||||||    
T  10472912 gaaaattgttgttcacatatgt--ttaagctgaaacacaccagtaaaataccgaaataccccttc 10472850  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 21604052 - 21604000
Alignment:
Q  30 tgttggaaaattgatcttcacatatgtgtttaacctgaaacacatcagtaaaa 82  Q
    |||| |||||||| | |||||| |||||||||| ||||||||||| |||||||    
T  21604052 tgtttgaaaattgttgttcacacatgtgtttaagctgaaacacattagtaaaa 21604000  T

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