View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16569_high_15 (Length: 520)

Name: NF16569_high_15
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16569_high_15
NF16569_high_15
[»] chr3 (2 HSPs)
chr3 (18-515)||(28983908-28984404)
chr3 (39-130)||(34147421-34147512)
[»] chr4 (8 HSPs)
chr4 (39-136)||(45113342-45113439)
chr4 (39-136)||(27366439-27366536)
chr4 (39-134)||(30200784-30200879)
chr4 (39-138)||(48945028-48945127)
chr4 (39-136)||(1838770-1838867)
chr4 (135-241)||(27758320-27758427)
chr4 (170-240)||(35434398-35434469)
chr4 (107-143)||(2299592-2299628)
[»] chr1 (3 HSPs)
chr1 (39-139)||(34917338-34917438)
chr1 (39-136)||(34024748-34024845)
chr1 (93-138)||(43742339-43742384)
[»] chr5 (3 HSPs)
chr5 (39-133)||(1592512-1592606)
chr5 (39-139)||(7771196-7771296)
chr5 (39-135)||(7955094-7955190)
[»] chr8 (5 HSPs)
chr8 (39-136)||(18166286-18166383)
chr8 (39-136)||(15362407-15362504)
chr8 (39-133)||(20266147-20266241)
chr8 (39-133)||(21052776-21052870)
chr8 (281-335)||(993720-993774)
[»] chr7 (4 HSPs)
chr7 (39-136)||(21868242-21868339)
chr7 (39-139)||(4057860-4057960)
chr7 (39-134)||(47022927-47023025)
chr7 (147-250)||(13073957-13074059)
[»] chr2 (3 HSPs)
chr2 (39-134)||(604299-604393)
chr2 (39-137)||(12335724-12335822)
chr2 (157-223)||(35400932-35400998)


Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 515
Target Start/End: Original strand, 28983908 - 28984404
Alignment:
Q  18 taaaataggggtatgggtggatatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatc 117  Q
    |||||||||||||||||||| |||||| ||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |||| |||    
T  28983908 taaaataggggtatgggtgggtatattttttttgttcgcttctaccaaacataggaatatcgtatttaatgcccttattctcataaatatattttttatc 28984007  T
Q  118 tcccaaacaaacaccccctaagaaaaggaaaataacataatcataaatctaggaaaggaaataaactgaaccgtaaaattagtaaagggaaataacggaa 217  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28984008 tcccaaacaaacaccccctaaggaaaggaaaataacataatcataaatctaggaaaggaaataaactgaaccgtaaaattagtaaagggaaataacggaa 28984107  T
Q  218 tgtaataagtgcaactctacttgatcacaaaattctttcatttaacgaaatttaacgaagatatatcatttcccaccccttcaaattca------ccttg 311  Q
    ||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      |||||    
T  28984108 tgtaataagtgcaa-------tgatcacaaaattctttcatttaacgaaatttaacgaagatatatcatttcccaacccttcaaattcaccttcaccttg 28984200  T
Q  312 tcctcaaggtgaaatgatggaaaaaatagtaggttgctcccaattgaacacttttaacgcttaactttttgtattcctatcaatagtgagagtttttaat 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28984201 tcctcaaggtgaaatgatggaaaaaatagtaggttgctcccaattgaacacttttaacgcttaactttttgtattcctatcaatagtgagagattttaat 28984300  T
Q  412 ttcccaattgaacttcacttcaccttacttataaatcatttggtcttttctattttaatcaatgtagaactaactttatgttcgactctcccacctataa 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||| |||| |||||||||||| | |||||    
T  28984301 ttcccaattgaacttcacttcaccttacttataaatcatttggtctttgctattttaatcaatgtagggctaacattattttcgactctccctcttataa 28984400  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 34147512 - 34147421
Alignment:
Q  39 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaaca 130  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| ||| |||||| |||| ||||||||||||||||    
T  34147512 tatattatttttgttcccttctaccaaacataggaatatcgtatttaatgccattattcccaggaatatattttttatctcccaaacaaaca 34147421  T

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Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 45113342 - 45113439
Alignment:
Q  39 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccccct 136  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||| |||| ||||||||||||||||||||||    
T  45113342 tatattatttttgttcccttctaccaaacataggaatatcgtatttaatgcccttattctcaggaatatattttttatctcccaaacaaacaccccct 45113439  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 27366439 - 27366536
Alignment:
Q  39 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccccct 136  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||| |||| ||||||||||||||||||||||    
T  27366439 tatattatttttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccccct 27366536  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 39 - 134
Target Start/End: Original strand, 30200784 - 30200879
Alignment:
Q  39 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacacccc 134  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||| |||| ||||||||||||||||||||    
T  30200784 tatattatttttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacacccc 30200879  T

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Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 39 - 138
Target Start/End: Original strand, 48945028 - 48945127
Alignment:
Q  39 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccccctaa 138  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||| ||| |||||| |||| ||||||||||||||||||||||||    
T  48945028 tatattatttttgttcccttctaccaaacatagaaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccccctaa 48945127  T

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Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 1838770 - 1838867
Alignment:
Q  39 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccccct 136  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||  ||||||||| |||| ||||||||||||||||||||||    
T  1838770 tatattatttttgttcccttctaccaaatataggaatatcgtatttaatgcccttattcctagaaatatattttttatctcccaaacaaacaccccct 1838867  T

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Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 135 - 241
Target Start/End: Original strand, 27758320 - 27758427
Alignment:
Q  135 ctaagaaaaggaaaataacataatcataaatctaggaaaggaaataaactgaaccgtaaaattagtaaagggaaataacggaatgtaat-aagtgcaact 233  Q
    ||||||||||| ||||||||||||||||||| ||| |||||||||||||| |||| ||||||||| ||| |||||||||  |||||||| |||| |||||    
T  27758320 ctaagaaaagggaaataacataatcataaatttagaaaaggaaataaactaaaccataaaattagaaaaaggaaataacttaatgtaatcaagttcaact 27758419  T
Q  234 ctacttga 241  Q
    ||||||||    
T  27758420 ctacttga 27758427  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 240
Target Start/End: Complemental strand, 35434469 - 35434398
Alignment:
Q  170 gaaaggaaataaactgaaccgtaaaattagtaaagggaaataacggaatgtaat-aagtgcaactctacttg 240  Q
    ||||| ||||||| |||||||||||||||| || || |||||||  || ||||| |||||||||||||||||    
T  35434469 gaaagaaaataaattgaaccgtaaaattagaaatggaaaataacttaacgtaatcaagtgcaactctacttg 35434398  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 2299628 - 2299592
Alignment:
Q  107 tacttttcatctcccaaacaaacaccccctaagaaaa 143  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  2299628 tactttttatctcccaaacaaacgccccctaagaaaa 2299592  T

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Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 34917438 - 34917338
Alignment:
Q  39 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccccctaa 138  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||| |||| ||||||||||||||||||||||||    
T  34917438 tatattatttttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccccctaa 34917339  T
Q  139 g 139  Q
    |    
T  34917338 g 34917338  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 34024845 - 34024748
Alignment:
Q  39 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccccct 136  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||  | |||||| ||| |||||| |||| ||||||||||||||||||||||    
T  34024845 tatattatttttgttcccttctaccaaacataggaatatcgtatttaatacctttattcccaggaatatattttttatctcccaaacaaacaccccct 34024748  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 43742339 - 43742384
Alignment:
Q  93 tattctcagaaatatacttttcatctcccaaacaaacaccccctaa 138  Q
    ||||| ||| ||||||||||| ||||||||||||||| ||||||||    
T  43742339 tattcccaggaatatactttttatctcccaaacaaacgccccctaa 43742384  T

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Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 1592606 - 1592512
Alignment:
Q  39 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccc 133  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||| |||| |||||||||||||||||||    
T  1592606 tatattatttttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccagaaatatattttttatctcccaaacaaacaccc 1592512  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 139
Target Start/End: Original strand, 7771196 - 7771296
Alignment:
Q  39 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccccctaa 138  Q
    ||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||  |  |||||| |||| ||||||||||||||||||||||||    
T  7771196 tatattatttttgtttccttctaccaaacatagaaatatcgtatttaatgtccttattcctaagaatatattttttatctcccaaacaaacaccccctaa 7771295  T
Q  139 g 139  Q
    |    
T  7771296 g 7771296  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 135
Target Start/End: Complemental strand, 7955190 - 7955094
Alignment:
Q  39 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccccc 135  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| | ||| |||||| |||| |||||||||||||||||||||    
T  7955190 tatattatttttgttcccttctaccaaacataggaatatcatatttaatgcccttatacccaggaatatattttttatctcccaaacaaacaccccc 7955094  T

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Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 18166383 - 18166286
Alignment:
Q  39 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccccct 136  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||| |||| ||||||||||||||||||||||    
T  18166383 tatattatttttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcacaggaatatattttttatctcccaaacaaacaccccct 18166286  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 15362504 - 15362407
Alignment:
Q  39 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccccct 136  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||| ||| |||||| |||| ||||||||||||||||||||||    
T  15362504 tatattatttttgttcccttctaccaaacataggaatatcatatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccccct 15362407  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 20266241 - 20266147
Alignment:
Q  39 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccc 133  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||  ||||||||| |||| |||||||||||||||||||    
T  20266241 tatattatttttgttcccttctaccaaacatagaaatatcgtatttaatgcccttattcctagaaatatattttttatctcccaaacaaacaccc 20266147  T

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Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 21052870 - 21052776
Alignment:
Q  39 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccc 133  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||  ||||||||| |||| |||||||||||||||||||    
T  21052870 tatattatttttgttcccttctaccaaacatagaaatatcgtatttaatgcccttattcctagaaatatattttttatctcccaaacaaacaccc 21052776  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 335
Target Start/End: Complemental strand, 993774 - 993720
Alignment:
Q  281 tatcatttcccaccccttcaaattcaccttgtcctcaaggtgaaatgatggaaaa 335  Q
    |||||||  ||||||||||| | |||||||||||||||||||||||||| |||||    
T  993774 tatcattctccaccccttcagactcaccttgtcctcaaggtgaaatgatagaaaa 993720  T

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Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 21868242 - 21868339
Alignment:
Q  39 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccccct 136  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||| |||| ||||||||||||||||||||||    
T  21868242 tatattatttttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccccct 21868339  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 4057960 - 4057860
Alignment:
Q  39 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccccctaa 138  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||| ||| |||||| |||| ||||||||||||||||||||||||    
T  4057960 tatattatttttgttcccttctaccaaacatagaaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccccctaa 4057861  T
Q  139 g 139  Q
    |    
T  4057860 g 4057860  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 39 - 134
Target Start/End: Complemental strand, 47023025 - 47022927
Alignment:
Q  39 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatactttt---catctcccaaacaaacacccc 134  Q
    |||||||||||||||||||||||||||| ||| |||||| |||||||||  |||||||||||| |||||| ||||    ||||||||||||||||||||    
T  47023025 tatattatttttgttcccttctaccaaatataggaatattgtatttaatacccttattctcagtaatatattttttactatctcccaaacaaacacccc 47022927  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 13073957 - 13074059
Alignment:
Q  147 aaataacataatcataaatctaggaaaggaaataaactgaaccgtaaaattagtaaagggaaataacggaatgtaat-aagtgcaactctacttgatcac 245  Q
    ||||| || |||| ||||| |||||||||||||||||  |||| ||||||||| ||| ||| | ||| || |||||| |||||| |||||||||| ||||    
T  13073957 aaatagcagaatcgtaaatttaggaaaggaaataaacataaccataaaattag-aaaaggagaaaaccgattgtaatcaagtgc-actctacttgctcac 13074054  T
Q  246 aaaat 250  Q
    |||||    
T  13074055 aaaat 13074059  T

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Target: chr2 (Bit Score: 64; Significance: 9e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 39 - 134
Target Start/End: Original strand, 604299 - 604393
Alignment:
Q  39 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacacccc 134  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||| ||||||| ||||  |||||||||||||||||||    
T  604299 tatattatttttgttcccttctaccaaacataggaatatcatatttaatgcccttattctcataaatata-tttttttctcccaaacaaacacccc 604393  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 39 - 137
Target Start/End: Complemental strand, 12335822 - 12335724
Alignment:
Q  39 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacacccccta 137  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||  ||||||  ||| |||||| |||| |||||||||||||||||||||||    
T  12335822 tatattatttttgttcccttctaccaaacataggaatatcatatttaatgctcttatttccaggaatatattttttatctcccaaacaaacacccccta 12335724  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 35400998 - 35400932
Alignment:
Q  157 atcataaatctaggaaaggaaataaactgaaccgtaaaattagtaaagggaaataacggaatgtaat 223  Q
    ||||||||| |||||||||||||||| |||||| ||||||||| ||| |||| |||| |||||||||    
T  35400998 atcataaatttaggaaaggaaataaattgaaccataaaattagaaaaaggaagtaaccgaatgtaat 35400932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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