View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16569_high_16 (Length: 512)

Name: NF16569_high_16
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16569_high_16
NF16569_high_16
[»] chr2 (5 HSPs)
chr2 (120-492)||(28593559-28593931)
chr2 (120-314)||(28587983-28588178)
chr2 (211-344)||(13872812-13872944)
chr2 (211-344)||(14012937-14013069)
chr2 (37-90)||(28593200-28593253)
[»] chr8 (4 HSPs)
chr8 (212-346)||(9824687-9824821)
chr8 (300-345)||(16843896-16843941)
chr8 (228-321)||(27290193-27290286)
chr8 (181-270)||(18354108-18354198)
[»] chr6 (1 HSPs)
chr6 (210-344)||(31169311-31169444)
[»] chr4 (3 HSPs)
chr4 (280-346)||(4394453-4394519)
chr4 (280-346)||(29067684-29067750)
chr4 (120-177)||(27990947-27991004)
[»] chr1 (2 HSPs)
chr1 (280-329)||(10228976-10229025)
chr1 (277-346)||(28224305-28224374)


Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 120 - 492
Target Start/End: Original strand, 28593559 - 28593931
Alignment:
Q  120 tcaatattatactttgttattttaaggtttaggaataagtgaaaaatatctatattaaatatttgtttttaaaa-ttccttgcaccaacggggttgagtc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28593559 tcaatattatactttgttattttaaggtttaggaataagtgaaaaatatctatattaaatatttgtttttaaaaattccttgcaccaacggggttgagtc 28593658  T
Q  219 taacgaaaggagttaaactctcacaatctaatgaatcaacgttcaaatattgactaggagagatactcatatttagcgtttgatatgcctcaaataacat 318  Q
    ||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  28593659 taacggaaggagttaaattctcacaatcttat-aatcaacgttcaaatattgactaggagagatactcatatttagcgttcgacatgcctcaaataacat 28593757  T
Q  319 tacacgtttaatgttcttaatttttatgaatacgatgttctctttttattctattattttttacggatacaaagagagaatgataaggttatcccacaat 418  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||| |||||||| |||||||||    
T  28593758 tacaagtttaatgttcttaatttttatgaatacgatgttctctttttattctattattttttacagataaaaagagaaaataataaggttgtcccacaat 28593857  T
Q  419 gatggtacaaatatcaattctctatagaaaatgtttccgtgctaatgaatccaaaatattatcatttgttaagc 492  Q
    ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28593858 gattgcacaaatatcaattctctatagaaaatgtttccgtgctaatgaatccaaaatattatcattagttaagc 28593931  T

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Target: chr2; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 120 - 314
Target Start/End: Original strand, 28587983 - 28588178
Alignment:
Q  120 tcaatattatactttgttattttaaggtttaggaataagtgaaaaatatctatattaaatatttgtttttaaaa-ttccttgcaccaacggggttgagtc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||    
T  28587983 tcaatattatactttgttattttaaggtttaggaataagtgaaaaatatctataaaaaatatttgtttttaaaaattccttgcaccaacggggttgagtc 28588082  T
Q  219 taacgaaaggagttaaactctcacaatctaatgaatcaacgttcaaatattgactaggagagatactcatatttagcgtttgatatgcctcaaata 314  Q
     |||| |||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| || ||||||||||||    
T  28588083 caacggaaggagttaaactctcgcaatctaatgaatcaacgctcaaatattgcctaggagagatactcatatttagcgttcgacatgcctcaaata 28588178  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 211 - 344
Target Start/End: Complemental strand, 13872944 - 13872812
Alignment:
Q  211 gttgagtctaacgaaaggagttaaactctcacaatctaatgaatcaacgttcaaatattgactaggagagatactcatatttagcgtttgatatgcctca 310  Q
    |||| |||||||||||||||||||||| ||||||  ||| |||||||  || | ||||||| | | || ||||||||||||||  || ||| || |||||    
T  13872944 gttgtgtctaacgaaaggagttaaactttcacaacttaacgaatcaatatt-atatattgattggaagtgatactcatatttaatgtctgagattcctca 13872846  T
Q  311 aataacattacacgtttaatgttcttaattttta 344  Q
    ||||| |||| || | || |||| ||||||||||    
T  13872845 aataaaattatacatatagtgttattaattttta 13872812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 211 - 344
Target Start/End: Complemental strand, 14013069 - 14012937
Alignment:
Q  211 gttgagtctaacgaaaggagttaaactctcacaatctaatgaatcaacgttcaaatattgactaggagagatactcatatttagcgtttgatatgcctca 310  Q
    |||| |||||||||||||||||||||| ||||||  ||| |||||||  || | ||||||| | | || ||||||||||||||  || ||| || |||||    
T  14013069 gttgtgtctaacgaaaggagttaaactttcacaacttaacgaatcaatatt-atatattgattggaagtgatactcatatttaatgtctgagattcctca 14012971  T
Q  311 aataacattacacgtttaatgttcttaattttta 344  Q
    ||||| |||| || | || |||| ||||||||||    
T  14012970 aataaaattatacatatagtgttattaattttta 14012937  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 28593200 - 28593253
Alignment:
Q  37 tggtagtccatcagttctcgataaatttgatcatgattacaccatgcatttata 90  Q
    |||||||| |||  |||||||||||||| |||||||||||||||||| ||||||    
T  28593200 tggtagtctatcgattctcgataaatttcatcatgattacaccatgcttttata 28593253  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 212 - 346
Target Start/End: Complemental strand, 9824821 - 9824687
Alignment:
Q  212 ttgagtctaacgaaaggagttaaactctcacaatctaatgaatcaacgttcaaatattgactaggagagatactcatatttagcgtttgatatgcctcaa 311  Q
    |||||||||||  ||| ||||| |||||||||| || | ||||||| ||| |||  ||||||||||| |||||  |||||||| |||||| || ||||||    
T  9824821 ttgagtctaacagaagaagttatactctcacaacctcacgaatcaatgtttaaactttgactaggagtgatacctatatttagtgtttgacatacctcaa 9824722  T
Q  312 ataacattacacgtttaatgttcttaatttttatg 346  Q
    |||  ||||||  ||||  ||| ||||||||||||    
T  9824721 atataattacagatttatagtttttaatttttatg 9824687  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 16843896 - 16843941
Alignment:
Q  300 gatatgcctcaaataacattacacgtttaatgttcttaatttttat 345  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||    
T  16843896 gatatgcctcaaataaaattacacatttaatgttcttaatttttat 16843941  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 228 - 321
Target Start/End: Original strand, 27290193 - 27290286
Alignment:
Q  228 gagttaaactctcacaatctaatgaatcaacgttcaaatattgactaggagagatactcatatttagcgtttgatatgcctcaaataacattac 321  Q
    |||||||| |||||| | || |||||||||  || ||||||| ||| |||| |||||| |||||||| || ||| ||||||||||||| |||||    
T  27290193 gagttaaattctcaccacctgatgaatcaatatttaaatatttacttggagtgatacttatatttagtgtctgacatgcctcaaataaaattac 27290286  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 181 - 270
Target Start/End: Complemental strand, 18354198 - 18354108
Alignment:
Q  181 tttgtttttaaaat-tccttgcaccaacggggttgagtctaacgaaaggagttaaactctcacaatctaatgaatcaacgttcaaatattg 270  Q
    |||||||||||||  | ||||||| |||| |||||| |||||   ||||||||| ||||||||||||| ||| |||||| ||| |||||||    
T  18354198 tttgtttttaaaaagttcttgcacaaacgaggttgattctaatagaaggagttagactctcacaatctgatgcatcaacattcgaatattg 18354108  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 344
Target Start/End: Original strand, 31169311 - 31169444
Alignment:
Q  210 ggttgagtctaacgaaaggagttaaactctcacaatctaatgaatcaacgttcaaata-ttgactaggagagatactcatatttagcgtttgatatgcct 308  Q
    ||||||||||||||||||||||||||||||| || | | |||||||||  || ||||| |||| | |||   ||| |||||||||  || | | ||||||    
T  31169311 ggttgagtctaacgaaaggagttaaactctcgcagtttgatgaatcaatattaaaatatttgattgggaataatattcatattta--gtgtcacatgcct 31169408  T
Q  309 caaataacattacacgtttaatgttcttaattttta 344  Q
    ||||||| |||| || |||| |||||||||||||||    
T  31169409 caaataaaattatacatttagtgttcttaattttta 31169444  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 346
Target Start/End: Original strand, 4394453 - 4394519
Alignment:
Q  280 gatactcatatttagcgtttgatatgcctcaaataacattacacgtttaatgttcttaatttttatg 346  Q
    ||||||||||||||  |||| | ||| |||||| || ||||||| ||||||| ||||||||||||||    
T  4394453 gatactcatatttaatgtttaacatgtctcaaacaaaattacacatttaatggtcttaatttttatg 4394519  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 346
Target Start/End: Complemental strand, 29067750 - 29067684
Alignment:
Q  280 gatactcatatttagcgtttgatatgcctcaaataacattacacgtttaatgttcttaatttttatg 346  Q
    |||| |||||||||| |||||| || |||||||||| |  |||| ||||| ||||||||||||||||    
T  29067750 gataatcatatttagtgtttgacatacctcaaataaaaccacacatttaaagttcttaatttttatg 29067684  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 27991004 - 27990947
Alignment:
Q  120 tcaatattatactttgttattttaaggtttaggaataagtgaaaaatatctatattaa 177  Q
    |||||||||||||| | ||||| |||||||| |||||||| || ||| ||||||||||    
T  27991004 tcaatattatacttggctatttcaaggtttaagaataagtaaataatgtctatattaa 27990947  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 10229025 - 10228976
Alignment:
Q  280 gatactcatatttagcgtttgatatgcctcaaataacattacacgtttaa 329  Q
    ||||||||||||||| |||| | ||||||||||||| ||||||| |||||    
T  10229025 gatactcatatttagtgtttcacatgcctcaaataaaattacacatttaa 10228976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 346
Target Start/End: Complemental strand, 28224374 - 28224305
Alignment:
Q  277 agagatactcatatttagcgtttgatatgcctcaaataacattacacgtttaatgttcttaatttttatg 346  Q
    ||||||||||||||| || ||| || ||| ||||||||| ||||||| |||||  | |||||||||||||    
T  28224374 agagatactcatattgagtgttcgacatgtctcaaataaaattacacatttaagatacttaatttttatg 28224305  T

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