View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16569_high_36 (Length: 383)
Name: NF16569_high_36
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_high_36 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 3 - 366
Target Start/End: Original strand, 41930386 - 41930749
Alignment:
| Q |
3 |
ttgttgttgttggtggtggtgagaggaaaaattgttcaaagagatggatattagaataaggaattcaataaaaagacccacttcagtgactaataagaac |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41930386 |
ttgttgttgttggtggtggtgagaggaaaaattgttcaaagagatggatattagaataaggaattcaataaaaagacccacttcagtgactaataagaac |
41930485 |
T |
|
| Q |
103 |
tttcttaaaagtatagttttgttcttcatgaaatcataattttctcacaaacatcacatggtgttggaaagatcactaaactgtaaacaaggacaaaaac |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41930486 |
tttcttaaaagtatagttttgttcttcatgaaatcataattttctcacaaacatcacatggtgttggaaagatcactaaactgtaaacaacgacaaaaac |
41930585 |
T |
|
| Q |
203 |
ttacctgtgtacactctatcaagcacacggggaacggcacaaaaaatagttggttttaactcagcaatgtcttccatcaacaatttgatatcctgcagcc |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41930586 |
ttacctgtgtacactctatcaagcacacggggaacggcacaaaaaatagttggttttaactcagcaatgtcttccatcaacaatttgatatcctgcagcc |
41930685 |
T |
|
| Q |
303 |
acattgaataaataatagtgctgatattaatctcaaatacaaattttgacttacttgatgttaa |
366 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41930686 |
acattgaataaataatagtgctcatattaatctcaaatacaaattttgacttacttgatgttaa |
41930749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 2203499 - 2203450
Alignment:
| Q |
211 |
gtacactctatcaagcacacggggaacggcacaaaaaatagttggtttta |
260 |
Q |
| |
|
||||||||||||||| |||||||| || ||||| |||||||||||||||| |
|
|
| T |
2203499 |
gtacactctatcaagtacacggggtaccgcacagaaaatagttggtttta |
2203450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 260
Target Start/End: Complemental strand, 2216116 - 2216060
Alignment:
| Q |
204 |
tacctgtgtacactctatcaagcacacggggaacggcacaaaaaatagttggtttta |
260 |
Q |
| |
|
|||||| ||||||||||||||| ||||| || || ||||| |||| ||||||||||| |
|
|
| T |
2216116 |
tacctgagtacactctatcaagtacacgaggtaccgcacagaaaaaagttggtttta |
2216060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University