View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16569_high_38 (Length: 379)
Name: NF16569_high_38
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_high_38 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 17 - 379
Target Start/End: Complemental strand, 3732263 - 3731890
Alignment:
| Q |
17 |
gatatgacgatatccaaagatatgtttctcaattatctgaaatggcgaaaggaatttcgagtcgacatgattcataaggtgaattgactcagaaggattt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3732263 |
gatatgacgatatccaaagatatgtttctcaattatctgaaatggcgaaaggaatttcgagtcgacatgattcataaggtgaattggctcagaaggattt |
3732164 |
T |
|
| Q |
117 |
cgatgcacgtaaaaattttaaatatgaaatttttgtttggtttggttgataaaactt-----------actgataaaattataaagttcttctttaccta |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||| |
|
|
| T |
3732163 |
cgatgcacgtaaaaattttaaatatgaaatttttgtttggtttggttgataaaactttttaaaaacttattgataaaattataaagttattctttaccta |
3732064 |
T |
|
| Q |
206 |
ttgtctgcatgctaaggtttagttcaataatgatgctattgagtattgaccatagttgagttttaatttgtatttgatgtcattcattttttggtacata |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3732063 |
ttgtctgcatgctaaggtttagttcaataatgatgctattgagtattgactatagttgagttttaatttgtatttgatgtcattcattttttggtacata |
3731964 |
T |
|
| Q |
306 |
atcaggaattcaaattcacagaatacacagaagtgaaaaaatgttatccccatggataccatggagttgataaa |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3731963 |
atcaggaattcaaattcacagaatacacagaagtgaaaaaatgttatccccatggataccatggagttgataaa |
3731890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 262 - 379
Target Start/End: Complemental strand, 11684327 - 11684208
Alignment:
| Q |
262 |
tgagttttaatttgtatttg--atgtcattcattttttggtacataatcaggaattcaaattcacagaatacacagaagtgaaaaaatgttatccccatg |
359 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
11684327 |
tgagttttaatttgttttttcaatgtcattcattttttggtacataatcaggaattcaaatttccagaatacacagaagtgaaaaaatgctatcctcatg |
11684228 |
T |
|
| Q |
360 |
gataccatggagttgataaa |
379 |
Q |
| |
|
||| |||||| ||||||||| |
|
|
| T |
11684227 |
gattccatggggttgataaa |
11684208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University