View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_high_40 (Length: 373)
Name: NF16569_high_40
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_high_40 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 33751691 - 33751349
Alignment:
| Q |
18 |
aggaaacacaattacaatattaacaaacacaacaaattctcacataacaggacataagtataacttattggcatctcaaattttgcaagcataatatgca |
117 |
Q |
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| T |
33751691 |
aggaaacacaattacaatattaacaaacacaacaaattctcacataacaggacataagtataacttattggcatctcaaattttgcaagcataatatgca |
33751592 |
T |
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| Q |
118 |
cctatttcactagtcctgatcttttacttctattggataacaatatctgcctcaacttctgcttatctcagataattgtcaaagtattgaactcaattca |
217 |
Q |
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| T |
33751591 |
cctatttcactagtcctgatcttttacttctattggataacaatatctgcctcaacttctgcttatctcagataattgtcaaagtattgaactcaattca |
33751492 |
T |
|
| Q |
218 |
tatacttgatttgatatacagtaggactgaaaaaacatcagagattatgtatataatgccaagagaaatcatcataaaaaacacctagaaattagagtgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33751491 |
tatacttgatttgatatacagtaggactgaaaaaacatcagagattatgtatataatgccaagagaaatcatcataaaaaacacctagaaattagagtgt |
33751392 |
T |
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| Q |
318 |
acaaatgactctaacaaaacgaagaggatcatgaccaaatcct |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33751391 |
acaaatgactctaacaaaacgaagaggatcatgaccaaatcct |
33751349 |
T |
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