View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_high_43 (Length: 351)
Name: NF16569_high_43
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_high_43 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 211 - 339
Target Start/End: Complemental strand, 52396031 - 52395903
Alignment:
| Q |
211 |
aaaattaattttgttaaaaagttgatttaacataaaatgattcatatttatagggagctatgaatgtttggttcctcttttacagatgttgaattgattt |
310 |
Q |
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| T |
52396031 |
aaaattaattttgttaaaaagttgatttaacataaaatgatccatatttatagggagctatgaatgtctggttcctcttttacagatgttgaattgattt |
52395932 |
T |
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| Q |
311 |
ttgacatgtttgttgttctcgattagaat |
339 |
Q |
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| T |
52395931 |
ttgacatgtttgttgttctcgattagaat |
52395903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 52396183 - 52396050
Alignment:
| Q |
1 |
aagcataataatttttctagcttcattcgccagctcaacacctatgtaagtcnnnnnnnttctcacaatcctattaataatcgtaattctctgtatcttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52396183 |
aagcataataatttttctagcttcattcgccagctcaacacctatgtaagtcaaaaaaattctcacaatcctattaataatcgtaattctctgtatcttc |
52396084 |
T |
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| Q |
101 |
atatgttatcattgcatacatatttataatcttg |
134 |
Q |
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| T |
52396083 |
atatgttatcattgcatacatatttataatcttg |
52396050 |
T |
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