View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16569_high_44 (Length: 349)
Name: NF16569_high_44
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_high_44 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 45791861 - 45791513
Alignment:
| Q |
1 |
tgtatacataaaacaaattatacaccaaggtgtcagattttactttcttcatgctaggttaacccaaaaataggcagtgctttttgaccctttgatttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45791861 |
tgtatacataaaacaaattatacaccaaggtgtcagattttactttcttcatgctaggttaacccaaaaataggcagtgctttttgaccctttgatttgc |
45791762 |
T |
|
| Q |
101 |
cccaacaataaacttggataaaagaatatcgcacatctcataattctaccatagaaagatatcacaaatcaatatgactggatccaaatatcaccgtgag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45791761 |
cccaacaataaacttggataaaagaatatcgcacatctcataattctaccatagaaacatatcacaaatcaatatgactggatccaaatatcaccgtgag |
45791662 |
T |
|
| Q |
201 |
aatgtcacggaagcaattcggggttgccactcgttggctctaacaaccatgttctatatccctcccaagctctctttccacagacacacataaaatcttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45791661 |
aatgtcacggaagcaattcggggttgccactcgttggctctaacaaccatgttctatatccctcccaagctctctttccacagacacacataaaatcttc |
45791562 |
T |
|
| Q |
301 |
ctacactgcaaaggtcgacagtaatcaagagacaaatgatccgctatct |
349 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45791561 |
ctacactgcaaaggtcaacagtaatcaagagacaaatgatccgctatct |
45791513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University