View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_high_45 (Length: 345)
Name: NF16569_high_45
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_high_45 |
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| [»] scaffold0204 (1 HSPs) |
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Alignment Details
Target: scaffold0204 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 329
Target Start/End: Original strand, 17790 - 18101
Alignment:
| Q |
17 |
ttctatatatgtacttgattttccactttatgtgaaaatatttgtatatatgtacttgatttttcactttatgtgaaaaaatttgtatatatgttaattt |
116 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17790 |
ttctatatatgta-ttgattttccactttatgtgaaaatatttccatatatgtacttgatttttcactttatgtgaaaaaatttgtatatatgttaattt |
17888 |
T |
|
| Q |
117 |
cttgaactttatgtgaaaatttgataaaagaatcacggttcaaacagttttaattgctttagacttgtttagttgtcttcttagctcaccaaaaagtagt |
216 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17889 |
ctttaactttatgtgaaaatttgataaaagaatcacggttcaaacagttttacttgctttagacttgtttagttgtcttcttagctcaccaaaaagtagt |
17988 |
T |
|
| Q |
217 |
ttagactttgtataaaattgaaggtgtgagtatagtaatgttcatccttgataaagtattattttctcttacatgcagctttctgtaatataaaagaaat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17989 |
ttagactttgtataaaattgaaggtgtgagtatagtaatgttcatccttcataaagtattattttctcttacatgcagctttctgtaatataaaagaaat |
18088 |
T |
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| Q |
317 |
ggaagatgggtct |
329 |
Q |
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||||||||||||| |
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| T |
18089 |
ggaagatgggtct |
18101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 329
Target Start/End: Original strand, 48330268 - 48330579
Alignment:
| Q |
17 |
ttctatatatgtacttgattttccactttatgtgaaaatatttgtatatatgtacttgatttttcactttatgtgaaaaaatttgtatatatgttaattt |
116 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48330268 |
ttctatatatgta-ttgattttccactttatgtgaaaatatttccatatatgtacttgatttttcactttatgtgaaaaaatttgtatatatgttaattt |
48330366 |
T |
|
| Q |
117 |
cttgaactttatgtgaaaatttgataaaagaatcacggttcaaacagttttaattgctttagacttgtttagttgtcttcttagctcaccaaaaagtagt |
216 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48330367 |
ctttaactttatgtgaaaatttgataaaagaatcacggttcaaacagttttacttgctttagacttgtttagttgtcttcttagctcaccaaaaagtagt |
48330466 |
T |
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| Q |
217 |
ttagactttgtataaaattgaaggtgtgagtatagtaatgttcatccttgataaagtattattttctcttacatgcagctttctgtaatataaaagaaat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48330467 |
ttagactttgtataaaattgaaggtgtgagtatagtaatgttcatccttcataaagtattattttctcttacatgcagctttctgtaatataaaagaaat |
48330566 |
T |
|
| Q |
317 |
ggaagatgggtct |
329 |
Q |
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||||||||||||| |
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| T |
48330567 |
ggaagatgggtct |
48330579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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