View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_high_46 (Length: 343)
Name: NF16569_high_46
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_high_46 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 40 - 230
Target Start/End: Complemental strand, 4388161 - 4387972
Alignment:
| Q |
40 |
ttaaaattcttccgcccaccaaacacttctttgtgttttatgggtgcctcttttgttgatcctatcatctcatcaatgattgtgttgatttgtgtcgctc |
139 |
Q |
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| T |
4388161 |
ttaaaattcttccgcccaccaaacacttctttgtgtgttatgggtgcctcttt-gttgatcctatcatctcatcaatgattgtgttgatttgtgtcgctc |
4388063 |
T |
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| Q |
140 |
tgccttcctttgtgactccaatcaaacaatttgttgaatcatggagaaagcaaaacatagtaagccgaggaacaagttctttacagaagca |
230 |
Q |
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| T |
4388062 |
tgccttcctttgtgactccaatcaaacaatttgtttaatcatggagaaagcaaaacatagtaagccgaggaacaagttctttacagaagca |
4387972 |
T |
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