View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_high_60 (Length: 318)
Name: NF16569_high_60
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_high_60 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 2524835 - 2525131
Alignment:
| Q |
1 |
ttggtttgaatctcatagggcaaggaagttatgttatagttttgttgattggtgttctaaacatgcatgtaatgtgcat-gaaagacatctttgattcaa |
99 |
Q |
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| T |
2524835 |
ttggtttgaatctcatagggcaaggaagttatgttatagttttgttgatcggtgttctaaacatg----taatgtgcattgaaagacatctttgattcaa |
2524930 |
T |
|
| Q |
100 |
atatttgtattgggttcaagtatccatcataatctctataacatatctttgtttataaaagaaggtagtacaaatatcaaatcaaaaatgcattttatag |
199 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2524931 |
atatttttattgggttcaagtatccatcataatctctataacatatctttgtttataaaagaaggcagtacaaatatcaaatcaaaaatgcattttatag |
2525030 |
T |
|
| Q |
200 |
ccatgatcaacatacatgtccaattttaaaatgaattttatttcttataaataggtgatgattgtattgccctcaatggtggttcttcttacatcaatgt |
299 |
Q |
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| T |
2525031 |
ccatgatcaacatacatgtccaattttaaaatgaattttatttcttataaataggtgatgattgtattgccctcaatggtggttcttcttacatcaatgt |
2525130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 215 - 290
Target Start/End: Original strand, 32924749 - 32924824
Alignment:
| Q |
215 |
atgtccaattttaaaatgaattttatttcttataaataggtgatgattgtattgccctcaatggtggttcttctta |
290 |
Q |
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|||| |||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||| || ||||| |
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| T |
32924749 |
atgtgcaattttaaaatgagttggttttcttataaataggtgatgattgtattgccatcaatggtggctcctctta |
32924824 |
T |
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