View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16569_high_62 (Length: 310)
Name: NF16569_high_62
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_high_62 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 3402402 - 3402695
Alignment:
| Q |
1 |
aacaattttactatatgatgaggatcaatatggagttttctcttggccccttgcgctaccattgttaggccacaatttcaagaattttcaagtagagaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3402402 |
aacaattttactatatgatgaggatcaatatggagttttctcttggccccttgcgctaccattgttaggccacaatttcaagaattttcaagtagagaat |
3402501 |
T |
|
| Q |
101 |
ttacatgaatgatctcacaatcacacttacccacattgattgatcctcgcatagagatgtctctatgctatgcataaccccttaagcaagctacactaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3402502 |
ttacatgaatgatctcacaatcacacttacccacattgattgatcctcgcatagagatgtctctatgctatgcataaccccttaagcaagctacactaga |
3402601 |
T |
|
| Q |
201 |
aacaagagtaacataattcataggtcaattctaaggtgcacaagtgaaacaaattttacaccatgccacacaattacattatctaagagcaatt |
294 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3402602 |
aacaagagtaacataattcataggtgaattctaaggtgcacaagtgaaacaaattttacaccatgccacacaattacattatctaagagcaatt |
3402695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University