View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16569_high_65 (Length: 301)

Name: NF16569_high_65
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16569_high_65
NF16569_high_65
[»] chr8 (4 HSPs)
chr8 (16-248)||(34108820-34109070)
chr8 (85-156)||(29608697-29608765)
chr8 (139-200)||(3693504-3693565)
chr8 (139-200)||(18257480-18257541)
[»] chr3 (3 HSPs)
chr3 (99-200)||(11500468-11500566)
chr3 (86-200)||(36644760-36644875)
chr3 (98-134)||(22516824-22516860)
[»] chr7 (2 HSPs)
chr7 (98-196)||(3404002-3404097)
chr7 (98-135)||(25032825-25032862)
[»] chr4 (1 HSPs)
chr4 (98-200)||(36690225-36690323)
[»] chr1 (6 HSPs)
chr1 (85-200)||(28111467-28111578)
chr1 (110-200)||(24574035-24574122)
chr1 (208-250)||(2758218-2758260)
chr1 (85-130)||(16948925-16948970)
chr1 (85-125)||(2758297-2758337)
chr1 (96-132)||(16904747-16904783)
[»] chr2 (1 HSPs)
chr2 (98-200)||(15545182-15545281)
[»] chr5 (6 HSPs)
chr5 (64-134)||(10912149-10912220)
chr5 (98-195)||(21178305-21178399)
chr5 (98-200)||(25815207-25815306)
chr5 (144-200)||(11783033-11783089)
chr5 (144-200)||(36409577-36409633)
chr5 (83-132)||(11857386-11857435)


Alignment Details
Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 34108820 - 34109070
Alignment:
Q  16 ataatactgcatgcattaaaggagaaaaaagattcacaaaattacaaaaa-ggaatcataaattgatatt----------------ttttgtcaatcgga 98  Q
    |||| ||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||                |||||||||| | |    
T  34108820 ataacactgcatgcattaaaggagaaaaaagattcacaaaataaaaaaaaaggaatcataaattgatattcattaaggaatatgttttttgtcaattgca 34108919  T
Q  99 aacaaaactttactttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattga 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34108920 aacaaaactttactttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaaattgaatgttaaaggctaagtaaattga 34109019  T
Q  199 gt-nnnnnnnttcattataggatatcatataaagttcacaggaaataaata 248  Q
    ||        |||||||||| ||||||||||||||||||||||||||||||    
T  34109020 gtaaaaaaaattcattatagaatatcatataaagttcacaggaaataaata 34109070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 85 - 156
Target Start/End: Original strand, 29608697 - 29608765
Alignment:
Q  85 ttttgtcaatcggaaacaaaactttactttatttttcattgttatgcattattataaacaatagttattgta 156  Q
    |||||| ||| | ||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||    
T  29608697 ttttgtaaattgcaaacaaaactttactttatttttcattgttatgc---attataaacaatagttagtgta 29608765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 3693504 - 3693565
Alignment:
Q  139 taaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattgagt 200  Q
    |||| |||||||| |||||||||||||| |||||||| |||| |||||||| ||||||||||    
T  3693504 taaataatagttagtgtaattaagcttaaaaacttgagtgttcaaggctaaataaattgagt 3693565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 18257541 - 18257480
Alignment:
Q  139 taaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattgagt 200  Q
    |||| |||||||| ||||| ||| ||||||||||||| |||| |||||||| ||||||||||    
T  18257541 taaataatagttagtgtaaataaacttagaaacttgagtgttcaaggctaaataaattgagt 18257480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 9e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 11500566 - 11500468
Alignment:
Q  99 aacaaaactttactttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattga 198  Q
    ||||||||||||||||||||||||||||||||||||||   ||| ||||| || |||||||||||||||||||||||||||| |||||||||||||||||    
T  11500566 aacaaaactttactttatttttcattgttatgcattat---aaataatagctagtgtaattaagcttagaaacttgaatgtttaaggctaagtaaattga 11500470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 200
Target Start/End: Original strand, 36644760 - 36644875
Alignment:
Q  86 tttgtcaatcggaaacaaaactttactttatttttcattgttatgcatt-attataaacaatagttattgtaattaagcttagaaacttgaatgttaaag 184  Q
    ||||||||| | ||||||||||||| ||||||||||||||||||  ||  ||| ||||||||||||| ||||||||||||||||||||||| |||| |||    
T  36644760 tttgtcaattgcaaacaaaactttaatttatttttcattgttatatatgcattctaaacaatagttaatgtaattaagcttagaaacttgagtgttcaag 36644859  T
Q  185 gctaagtaaattgagt 200  Q
    ||| | ||||||||||    
T  36644860 gctgaataaattgagt 36644875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 22516824 - 22516860
Alignment:
Q  98 aaacaaaactttactttatttttcattgttatgcatt 134  Q
    |||||||| |||||||||||||||||| |||||||||    
T  22516824 aaacaaaaatttactttatttttcatttttatgcatt 22516860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 196
Target Start/End: Complemental strand, 3404097 - 3404002
Alignment:
Q  98 aaacaaaactttactttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaatt 196  Q
    |||||||| ||||||||||||||||||||||||||   ||||||| ||||||||  |||||||||||||||||||||||| || |||| |||| |||||    
T  3404097 aaacaaaattttactttatttttcattgttatgca---ttataaataatagttagcgtaattaagcttagaaacttgaattttcaaggttaagcaaatt 3404002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 25032825 - 25032862
Alignment:
Q  98 aaacaaaactttactttatttttcattgttatgcatta 135  Q
    |||||||| |||||||||||||||||||||||||||||    
T  25032825 aaacaaaagtttactttatttttcattgttatgcatta 25032862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 200
Target Start/End: Complemental strand, 36690323 - 36690225
Alignment:
Q  98 aaacaaaactttactttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattg 197  Q
    ||||||||||||||||||||| ||||||||||||   |||| ||| |||||||| || ||||||||||||||||||||| | | ||||||||||||||||    
T  36690323 aaacaaaactttactttatttctcattgttatgc---attaaaaataatagttagtg-aattaagcttagaaacttgaaggctcaaggctaagtaaattg 36690228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 200
Target Start/End: Complemental strand, 28111578 - 28111467
Alignment:
Q  85 ttttgtcaatcggaaacaaaactttactttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaacttgaatgttaaag 184  Q
    |||||| ||| | ||||||||||||||||||||||||||||||||||||     |||| || ||||| |||||| |||||||||||||||| |||| |||    
T  28111578 ttttgtaaattgcaaacaaaactttactttatttttcattgttatgcatc----taaataaaagttagtgtaatcaagcttagaaacttgagtgttcaag 28111483  T
Q  185 gctaagtaaattgagt 200  Q
     |||| ||||||||||    
T  28111482 tctaaataaattgagt 28111467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 200
Target Start/End: Complemental strand, 24574122 - 24574035
Alignment:
Q  110 actttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattgagt 200  Q
    ||||||||||| |||| |||||||| |   ||| |||||  |||||||||||| |||||||||||| |||| |||||||| ||||| ||||    
T  24574122 actttattttttattggtatgcattct---aaataataggcattgtaattaagattagaaacttgagtgttgaaggctaaataaatcgagt 24574035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 2758260 - 2758218
Alignment:
Q  208 ttcattataggatatcatataaagttcacaggaaataaatagt 250  Q
    |||||||||  |||||||||||||||||||| |||||||||||    
T  2758260 ttcattatacaatatcatataaagttcacagaaaataaatagt 2758218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 16948970 - 16948925
Alignment:
Q  85 ttttgtcaatcggaaacaaaactttactttatttttcattgttatg 130  Q
    |||||| ||| ||||||||||| |||||| ||||||||||||||||    
T  16948970 ttttgtaaattggaaacaaaacattacttaatttttcattgttatg 16948925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 2758337 - 2758297
Alignment:
Q  85 ttttgtcaatcggaaacaaaactttactttatttttcattg 125  Q
    |||||| ||| | ||||||||||||||||||||||||||||    
T  2758337 ttttgtaaattgcaaacaaaactttactttatttttcattg 2758297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 16904747 - 16904783
Alignment:
Q  96 ggaaacaaaactttactttatttttcattgttatgca 132  Q
    |||||||||||| |||||||||||||||| |||||||    
T  16904747 ggaaacaaaactctactttatttttcattattatgca 16904783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 15545182 - 15545281
Alignment:
Q  98 aaacaaaactttactttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattg 197  Q
    ||||||||||||||||||||||||||| | ||||||| |   ||| |||||||  ||||||||||||||||||||||| |||  |||||||| ||| |||    
T  15545182 aaacaaaactttactttatttttcattttaatgcattct---aaataatagttggtgtaattaagcttagaaacttgagtgtacaaggctaaataatttg 15545278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 10912220 - 10912149
Alignment:
Q  64 aaggaatcataaattgatatt-ttttgtcaatcggaaacaaaactttactttatttttcattgttatgcatt 134  Q
    ||||||||||||||| ||||| |||||| ||| | |||||||||||||||||||||||||||||||| ||||    
T  10912220 aaggaatcataaattaatattcttttgtaaattgcaaacaaaactttactttatttttcattgttatccatt 10912149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 195
Target Start/End: Complemental strand, 21178399 - 21178305
Alignment:
Q  98 aaacaaaactttactttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaat 195  Q
    |||||||| ||||||||| ||||||||||||||||||     ||| |||||||  |||||||||| |||||||||||| |||| |||||||| |||||    
T  21178399 aaacaaaattttactttagttttcattgttatgcattcc---aaataatagttggtgtaattaaggttagaaacttgagtgttcaaggctaaataaat 21178305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 98 - 200
Target Start/End: Complemental strand, 25815306 - 25815207
Alignment:
Q  98 aaacaaaactttactttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattg 197  Q
    |||||||| |||||||||||||| ||||||||||| ||    ||| |||| ||| | |||||||| ||||||||||||||||| ||| | ||||||| ||    
T  25815306 aaacaaaattttactttattttttattgttatgcaataa---aaataataattagtataattaagtttagaaacttgaatgttcaagaccaagtaaaatg 25815210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 11783033 - 11783089
Alignment:
Q  144 aatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattgagt 200  Q
    |||||||| |||||||||||||||||| |||| | ||||||| ||| ||||||||||    
T  11783033 aatagttagtgtaattaagcttagaaatttgagtcttaaaggttaaataaattgagt 11783089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 36409633 - 36409577
Alignment:
Q  144 aatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattgagt 200  Q
    |||||||| | |||||||| |||||||| |||||||| || ||||||||||||||||    
T  36409633 aatagttagtttaattaagattagaaacatgaatgttcaatgctaagtaaattgagt 36409577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 11857435 - 11857386
Alignment:
Q  83 ttttttgtcaatcggaaacaaaactttactttatttttcattgttatgca 132  Q
    |||||||| ||| | ||||||||| |||||||||||| ||||||||||||    
T  11857435 ttttttgtaaattgcaaacaaaacgttactttattttccattgttatgca 11857386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University