View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_high_70 (Length: 269)
Name: NF16569_high_70
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_high_70 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 36 - 251
Target Start/End: Complemental strand, 42786622 - 42786407
Alignment:
| Q |
36 |
aacgatgacctagtcaataatatttgataaaaataagagaaagtaaatgtgtgctcaaaacttaactcgtattatttttattcattgttgttaaatcttg |
135 |
Q |
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| T |
42786622 |
aacgatgacctaatcaataatatttgataaaaataagagaaagtaaatgtgtgctcaaaacttaactcgtattattttcattcattgttgttaaatcttg |
42786523 |
T |
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| Q |
136 |
ctcaaaagaacaaagatcaccgtgaatctctgctctactttcaagtaggacgtgaatcttgattcatattttgagcaattttgaaatgtgagtctactat |
235 |
Q |
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| T |
42786522 |
ctcaaaagaacaaagatcaccgtgaatctctgctctactttcaagtaggacgtgaatcttgattcatattttgagcaattttgaaatgtgagtctactat |
42786423 |
T |
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| Q |
236 |
atatgaaccatttatc |
251 |
Q |
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|||||||||||||||| |
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| T |
42786422 |
atatgaaccatttatc |
42786407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 42786674 - 42786640
Alignment:
| Q |
1 |
acaatactagtgagaagtaaaagttcacggtcatt |
35 |
Q |
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| T |
42786674 |
acaatactagtgagaagtaaaagttcacggtcatt |
42786640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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