View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_high_75 (Length: 262)
Name: NF16569_high_75
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_high_75 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 3724902 - 3725148
Alignment:
| Q |
1 |
tatcatgggatgggagagaaatgcatagaaaaaataagacatgagttgaaatttgactaatacacttactagattaagattacaaccatctgagtttaat |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3724902 |
tatcatgggatgggagagaaatgcatagcaaaaatacgacatgagttaaaatttgactaatacacttactagattaagattacaaccatctgagtttaat |
3725001 |
T |
|
| Q |
101 |
tttattgggttcatctctctaaaggtccttgaaatttctctatattcagacatcgaccacatcctgattcagaatttaaggttaacattacacgtattat |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3725002 |
tttattggtttcatctctctaaaggtccttgaaatttctctatattcagacatcgaccacatcctgattcagaatttaaggttaacattaaacgtattat |
3725101 |
T |
|
| Q |
201 |
aaattttaactcttttgagatatcaatgtaatagatacagaagaaat |
247 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3725102 |
aaattttaactcttttgagatatcaatgtaatagatatagaagaaat |
3725148 |
T |
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