View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_high_80 (Length: 254)
Name: NF16569_high_80
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_high_80 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 56019076 - 56019314
Alignment:
| Q |
1 |
ctgatgcataatgtaatacacataaatctagacatgcatgcgttgaatatggtctatcctatgaaagctagctacagaatattgaaaaagcagagtcatt |
100 |
Q |
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| T |
56019076 |
ctgatgcatcatgtaatacacataaagctagacatgcatgcgttgaatatggtctatcctatgaaagctagctacagaatattgaaaaagcagagtcatt |
56019175 |
T |
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| Q |
101 |
catgcttttctctcgccttgtttacgaatgataatcaatatttttaagtcatgatcatgttattttttgcaatatacatagtaatcaattgggatctagt |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
56019176 |
catgctcttctctcgccttgtttacgaatgataatcaatatttttaagtcatgatcatgttattttttgcaatatacatagtaatcaattgggacctagt |
56019275 |
T |
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| Q |
201 |
agaaatgattgatgtgcaatgtgtgtaaatgttggaaat |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
56019276 |
agaaatgattgatgtgcaatgtgtgtaaatgttggaaat |
56019314 |
T |
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