View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_high_99 (Length: 234)
Name: NF16569_high_99
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_high_99 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 4485400 - 4485197
Alignment:
| Q |
18 |
gaaagaacaagaactagcggaaattgcatcccaaagttacaacaacacttcaaagaactacaagttggttctctattttcagaattccaccaaggatacc |
117 |
Q |
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| T |
4485400 |
gaaagaacaagaactagcggaaattgcatcccaaagttacagcaacacttcaaagaactacaagttggttctctattttcagaattccaccaaggatacc |
4485301 |
T |
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| Q |
118 |
ctcaaggccatcaaaattggttagtatatctaata-tttgctgagaaaaacattaaaagtccatgcccttttgggtatctttcttaaaggtgtctaagaa |
216 |
Q |
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| T |
4485300 |
ctcaaggccatcaaaattggttagtatatctaatatttttctgagaaaaacattaaaagtccatgccctttttggtatctttcttaaaggtgtataagaa |
4485201 |
T |
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| Q |
217 |
taat |
220 |
Q |
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|||| |
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| T |
4485200 |
taat |
4485197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 4489569 - 4489364
Alignment:
| Q |
18 |
gaaagaacaagaactagc---ggaaattgcatcccaaagttacaacaacacttcaaagaactacaagttggttctctattttcagaattccaccaaggat |
114 |
Q |
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||||||||||||| |||| ||| |||||| ||||||||||||||||||||||||||||||||||||| | |||||| || |||| ||||| |||||| |
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| T |
4489569 |
gaaagaacaagaagtagccatggacattgcagcccaaagttacaacaacacttcaaagaactacaagttagctctctacttcaagaactccacaaaggat |
4489470 |
T |
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| Q |
115 |
accctcaaggccatcaaaattggttagtatatctaatatttgctgagaaaaacattaaaagtccatgcccttttgggtatctttcttaaaggtgtctaag |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4489469 |
accctcaaggccatcaaaattggttagtatatctaatatttgctgagaaaaacattaaaagtccatgcccttttgggtatctttcttaaaggtgtataag |
4489370 |
T |
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| Q |
215 |
aataat |
220 |
Q |
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|||||| |
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| T |
4489369 |
aataat |
4489364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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