View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_1 (Length: 1121)
Name: NF16569_low_1
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 479; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 550 - 1101
Target Start/End: Complemental strand, 42934135 - 42933593
Alignment:
| Q |
550 |
ataattatatatagaatcaaagtggttaattcaaccaaagaaacacaaatttacaaaacgaaattgggaaaacataaaataaaatagatcaccaactaaa |
649 |
Q |
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| T |
42934135 |
ataattatatatagaatcaatgtgattaattcaaccaaagaaactcaaatttacaaaacgaaattgggaaaacataaaataaaatagatcaccaactaaa |
42934036 |
T |
|
| Q |
650 |
taacaaacctggtgccccggatcaatactacttctgctgttggtatccaaagaattcatttcattgattaggtcaaaaacgggtttctgatcatttcctt |
749 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42934035 |
taacaaacctggtgccccggatcaatactact---gctgttggtatccaaagaattcatttcattgattaggtcaaaaacgggtttctgatcatttcctt |
42933939 |
T |
|
| Q |
750 |
gatcatcaccaacacgttcctgatcttcttcaccgtcttcttcgttattgttaccctccaaagttaaaggagacaacggtatattaatattgtttgccca |
849 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42933938 |
gatcatcaccaacacgttcctgatcttcttcaccatcttcttccttattgttaccctccaaagttaaaggagacaacggtatattaatattgtttgccca |
42933839 |
T |
|
| Q |
850 |
tgaattaagatcctcttgtaaaggaacataattagggttaataccgacatcatcgacaacatattgttgctgcagttgcaattgctgttgaggcagcata |
949 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42933838 |
tgaattaagatcctcttgtaaaggaacataattagggttaatacagacatcatcgacaacatattgctgctgcagttgcaattgctgttgaggcagcata |
42933739 |
T |
|
| Q |
950 |
ttcatattcatattcagttgatcatcaacaaaatgctgctggttaaaatgattgataatattcaaagcagcatcattatcctcgttattgttatgattaa |
1049 |
Q |
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| T |
42933738 |
ttcata------ttcagttgatcatcaacaaaatgctgctggttaaaatgattgataatattcaaagcagcatcattatcctcgttattgttatgattaa |
42933645 |
T |
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| Q |
1050 |
tgacatgcatgtcattataatgatgattagccacagaggcaaattgttgttg |
1101 |
Q |
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| T |
42933644 |
tgacatgcatgtcattataatgatgattagacacagcggcaaattgttgttg |
42933593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 216 - 552
Target Start/End: Complemental strand, 42934509 - 42934157
Alignment:
| Q |
216 |
aattaaatgtaaacttaagaagtagtactatcatggaattaatgcattttatgtcattcaatactctctttttcgtccaaggtgtgagatggatctgcta |
315 |
Q |
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| T |
42934509 |
aattaaatgtaaacttaagaagtagtactatcatggaattaatgcattttatgtcattcaatactctctttttcgtccaaggtgtgagatggatctgcta |
42934410 |
T |
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| Q |
316 |
attagttccaccataaaaactttcta----------------cttctattagtggatttcattcagcacatgttatatccaaacatacataatcaagtac |
399 |
Q |
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| T |
42934409 |
attagttccaccataaaaactttctagttctaaaaggtataacttctattagttgatttcattcagcacatgttatatccaaacatacataatcaagtac |
42934310 |
T |
|
| Q |
400 |
taaaaccataacatcataatcatacatgaaatgccccaaattataatgtgttctaactcctgtaagccaaaaaatctcatgaaacctagattaaaatgaa |
499 |
Q |
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| T |
42934309 |
taaaaccataacatcataatcatacatgaaatgccccaaattataatgtgttctaactcctgtaagccaaaaaatctcatgaaacctagattaaaatgaa |
42934210 |
T |
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| Q |
500 |
gcaagcaatgatttgtaacaaacaaacaaatcaacaacaaacttggcttcata |
552 |
Q |
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| T |
42934209 |
gcaagaaatgatttgtaacaaacaaacaaatcaacaacaaacttggcttcata |
42934157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 42934753 - 42934524
Alignment:
| Q |
2 |
agaatatcatatcagaaaatgttaaaattaatggtaaaaaatctatcttaggatatttgcatttttaattgaagggttggttaaatctgtgcttttgagg |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42934753 |
agaatatcatatcagaaaatgttaaaattaatggtaaaaaatctatcttaggatatttgcatttttaattgaagggttggttaaatctgtgcttttgagg |
42934654 |
T |
|
| Q |
102 |
ggatattagcagaggtacagaatcctaaaactagagttgtgattggttttatttgtggatatggacaattagagtaattatgttagattcaattatttgc |
201 |
Q |
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| T |
42934653 |
ggatattagcagaggtacagaatcctaaaactagagttgtgattggttttatttgtggatatggacaattagagtaattatgttagattccattatttgc |
42934554 |
T |
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| Q |
202 |
atgacataaaagacaattaaatgtaaactt |
231 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
42934553 |
atgacataaaagacaattaaatgtaaactt |
42934524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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