View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_10 (Length: 581)
Name: NF16569_low_10
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 17 - 571
Target Start/End: Original strand, 34093140 - 34093675
Alignment:
| Q |
17 |
agtgaatactccaaaatcaaaactttgctatcttatatcaaatctcagtagcactgagagtagccgaaaaggtaaccatgcatagttttaggtgcagagt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34093140 |
agtgaatactccaaaatcaaaactttgctatcttatatcaaatctcagtagcactgcgagtagccgaaaaggtaaccatgcatagttttaggtgcagagt |
34093239 |
T |
|
| Q |
117 |
gcaattctgatatgtgtatgtatgtcaatgtgacatgacttctactttggcatattccaataccagaaaaattgattctactaaaattcatgagccacga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34093240 |
gcaattctgatatgtgtatgtatgtcaatgtgacatgacttctactttggcatattccaataccagaaaaattgattctactaaaattcatgagccacga |
34093339 |
T |
|
| Q |
217 |
gaaaatggaaaaaagacaataacactatattaagaaagtgctattaattaatataataatacttcattatggcaaacatgtc---actaccagtgctaac |
313 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34093340 |
gaaaatggaaaaaagacaataaccctatattaagaaagtgctattaattaatataataatacttcattatggcaaacatgtcactactaccagtgctaac |
34093439 |
T |
|
| Q |
314 |
agataaccacaatggaagcagcagcattaccatcatgtcgacatgtaaaatcatagagtgaaaattttatcaaagatccttcaaatttttactaccattt |
413 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34093440 |
agataaccacaatgga---agcagcattaccatcatgtcgacaagtaaaatcatagagtgaaaattttatcaaagatccttcaaatttttactaccattt |
34093536 |
T |
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| Q |
414 |
attgcattaacatcatcacatcacatcacatcactagttaatttctagcaaggatttgttcagttagagcaggaagacttgaaaggcaagcataattaga |
513 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34093537 |
attgcattaacatcatcacatcacatc-------------------agcaaggatttgttcagttagagcaggaagacttgaaaggcaagcataattaga |
34093617 |
T |
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| Q |
514 |
agctcaagatccaagtgaggtgcaggctaatatcattacctttttctggttatctctg |
571 |
Q |
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| T |
34093618 |
agctcaagatccaagtgaggtgcaggctaatatcattacctttttctggttatctctg |
34093675 |
T |
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