View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_100 (Length: 249)
Name: NF16569_low_100
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_100 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 39055563 - 39055804
Alignment:
| Q |
1 |
ttatgttacagggatattaaacctgataacttattacttgataaatatggacacttgaaactatcggattttggactatgtaaaccgttagactgtagtg |
100 |
Q |
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| T |
39055563 |
ttatgatacagggatattaaacctgataacttattacttgataaatatggacacttgaaactatcggattttggactatgtaaaccgttagactgtagtg |
39055662 |
T |
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| Q |
101 |
tacttgaagaatcagacttttctagtggccagaatgcaaatggaacaacacaaaatgatgatcgtgcatttccgaaacgtacacaacaagaacagttgga |
200 |
Q |
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| T |
39055663 |
tacttgaagaatcagacttttctattggccagaatgcaaatggaacaacacaaaatgatgatcgtgcatttccaaaacgtacacaacaagaacagttgga |
39055762 |
T |
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| Q |
201 |
aaactggcagaaaaataggaggacacttgtaagttcatttct |
242 |
Q |
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| T |
39055763 |
aaactggcagaaaaataggaggacacttgtaagttcatttct |
39055804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 235
Target Start/End: Complemental strand, 30393849 - 30393618
Alignment:
| Q |
4 |
tgttacagggatattaaacctgataacttattacttgataaatatggacacttgaaactatcggattttggactatgtaaaccgttagactgtagtgtac |
103 |
Q |
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| T |
30393849 |
tgttgcagggatatcaagcctgacaacttattacttgatagatatggacacctgagactgtctgactttggactttgtaaaccattagattgtagtacgc |
30393750 |
T |
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| Q |
104 |
ttgaagaatcagacttttctagtggccagaatgcaaatggaacaacacaaaatgatgatcgtgcatttccgaaacgtacacaacaagaacagttggaaaa |
203 |
Q |
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| T |
30393749 |
ttgaagaaaaggatttctctgtgggtcagaatgtgaatggatctacacagaatgaggagcgttcagctccaaaacgcacacaacaagaacaactgcaaaa |
30393650 |
T |
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| Q |
204 |
ctggcagaaaaataggaggacacttgtaagtt |
235 |
Q |
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| T |
30393649 |
ctggcaaaagaacaggaggacgcttgtaagtt |
30393618 |
T |
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