View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16569_low_104 (Length: 244)
Name: NF16569_low_104
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_104 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 170
Target Start/End: Complemental strand, 24242555 - 24242400
Alignment:
| Q |
15 |
atgaaaaagacagacataccccttgaatcctctttccagtaacagggcatttaggtccactagctctcttcttggttgtctgataaacaagcttaccacc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24242555 |
atgaaaaagacagacataccccttgaatcctctttccagtaacagggcatttaggtccactagctctcttcttggttgtctgataaacaagcttaccacc |
24242456 |
T |
|
| Q |
115 |
ttcattcaacaaatccaattagaacgaactctacaagtattaaacgacaacaaagt |
170 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24242455 |
tgcattcaacaaatccaattagaacgaactctacaagtattaaacgacaacaaagt |
24242400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 24242377 - 24242345
Alignment:
| Q |
193 |
ttagttaccgggtgttttgacaaccctgtgttg |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
24242377 |
ttagttaccgggtgttttgacaaccctgtgttg |
24242345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 6855268 - 6855337
Alignment:
| Q |
38 |
tgaatcctctttccagtaacagggcatttaggtccactagctctcttcttggttgtctgataaacaagctt |
108 |
Q |
| |
|
|||| |||||||||| ||||| |||||| |||||||||||||||||| | |||||| | ||||||||||| |
|
|
| T |
6855268 |
tgaaccctctttccattaacaatgcattttggtccactagctctcttcctagttgtc-ggtaaacaagctt |
6855337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 17827984 - 17828076
Alignment:
| Q |
28 |
acataccccttgaatcctctttccagtaacagggcatttaggtccactagctctcttcttggttgtctgataaacaagcttaccaccttcatt |
120 |
Q |
| |
|
|||||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||| |||| |
|
|
| T |
17827984 |
acatactccttgaattctcttgccagtaacagggcacttaggtccactagctctcttcttagtagtctgataaacaagcttaccacctacatt |
17828076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 2420370 - 2420456
Alignment:
| Q |
29 |
cataccccttgaatcctctttccagtaacagggcatttaggtccactagctctcttcttggttgtctgataaacaagcttaccacct |
115 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| | ||| |||||| |
|
|
| T |
2420370 |
cataccccttggatcctctttccagtaacaggacacttaggtccactagctctcttcttagttgtctgataaaccaactttccacct |
2420456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 2864802 - 2864866
Alignment:
| Q |
50 |
ccagtaacagggcatttaggtccactagctctcttcttggttgtctgataaacaagcttaccacc |
114 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||| || || |||||||||||| ||||||| |
|
|
| T |
2864802 |
ccagtaacagggcacataggttcactagctctcttcttagtagtatgataaacaagcctaccacc |
2864866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 6100606 - 6100561
Alignment:
| Q |
67 |
aggtccactagctctcttcttggttgtctgataaacaagcttacca |
112 |
Q |
| |
|
||||| ||||||||||||||| || || |||||||||||||||||| |
|
|
| T |
6100606 |
aggtcgactagctctcttcttagtagtgtgataaacaagcttacca |
6100561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University