View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_105 (Length: 242)
Name: NF16569_low_105
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_105 |
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| [»] scaffold0417 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 27426263 - 27426488
Alignment:
| Q |
1 |
gaagatgaaatggttttaggcgatctgaatgttaaacctggccaagcatgggagtattgcccaagagaggccttaagaagagtttccaaaattctcaaag |
100 |
Q |
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| T |
27426263 |
gaagatgaaatggttttaggcgatctgaatgttaaaccttgccaagcatgggagtattgcccaagagaggccttaagaagagtttccaaaattctcaaag |
27426362 |
T |
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| Q |
101 |
atgaatttgacttggtatgttgcatagcttgtcttatttataattacctatgttgtttatcccattagaaatggttttattgattttttctcttcttcac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27426363 |
atgaatttgacttggtatgttgcatagcttgtcttatttataattacctatgttgtttaacccattagaaatggttttattgattttttctcttcttcac |
27426462 |
T |
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| Q |
201 |
tcaacaattatgttaggtgtattttt |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
27426463 |
tcaacaattatgttaggtgtattttt |
27426488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 27405346 - 27405484
Alignment:
| Q |
1 |
gaagatgaaatggttttaggcgatctgaatgttaaacctggccaagcatgggagtattgcccaagagaggccttaagaagagtttccaaaattctcaaag |
100 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
27405346 |
gaagatgaaatggttttaggtgatctaaatgttaaacctggccaagcatgggagtattgcccaagagacgccttaagaagagtttccaaaattctgaaag |
27405445 |
T |
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| Q |
101 |
atgaatttgacttggtatgttgcatagcttgtcttattt |
139 |
Q |
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| T |
27405446 |
atgaatttaacttggtatgttgcatagcttgtcttattt |
27405484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 4 - 121
Target Start/End: Complemental strand, 27254204 - 27254087
Alignment:
| Q |
4 |
gatgaaatggttttaggcgatctgaatgttaaacctggccaagcatgggagtattgcccaagagaggccttaagaagagtttccaaaattctcaaagatg |
103 |
Q |
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| T |
27254204 |
gatgaaatggttttaggggatctcaatgttaaacctggtcaagcatgggagtattgcccaagagaggccttaagaagagtttccaaaattctcaaagatg |
27254105 |
T |
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| Q |
104 |
aatttgacttggtatgtt |
121 |
Q |
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|||||||||||||||||| |
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| T |
27254104 |
aatttgacttggtatgtt |
27254087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 2 - 121
Target Start/End: Complemental strand, 27294329 - 27294210
Alignment:
| Q |
2 |
aagatgaaatggttttaggcgatctgaatgttaaacctggccaagcatgggagtattgcccaagagaggccttaagaagagtttccaaaattctcaaaga |
101 |
Q |
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||||||||||||||||||| ||||| || ||||||||||| ||||||||||| | ||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
27294329 |
aagatgaaatggttttaggggatctcaacgttaaacctggtcaagcatgggaacaatgcccgagagaggccttaagaaaagtttccaaaattctcaaaga |
27294230 |
T |
|
| Q |
102 |
tgaatttgacttggtatgtt |
121 |
Q |
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| T |
27294229 |
tgaatttgacttggtatgtt |
27294210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 27405528 - 27405561
Alignment:
| Q |
191 |
tcttcttcactcaacaattatgttaggtgtattt |
224 |
Q |
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| T |
27405528 |
tcttcttcactcaacaattatgttgggtgtattt |
27405561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 2 - 127
Target Start/End: Original strand, 13354815 - 13354940
Alignment:
| Q |
2 |
aagatgaaatggttttaggcgatctgaatgttaaacctggccaagcatgggagtattgcccaagagaggccttaagaagagtttccaaaattctcaaaga |
101 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||| |||||||||||||||| |
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| T |
13354815 |
aagatgaaatggttttaggtgatctgaatgttaaacctggtcaagcttgggaatattgcccaagagaagcctttagaagagttaccaaaattctcaaaga |
13354914 |
T |
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| Q |
102 |
tgaatttgacttggtatgttgcatag |
127 |
Q |
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|||||||||||||||||| ||||||| |
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| T |
13354915 |
tgaatttgacttggtatgctgcatag |
13354940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 124
Target Start/End: Complemental strand, 12605 - 12483
Alignment:
| Q |
2 |
aagatgaaatggttttaggcgatctgaatgttaaacctggccaagcatgggagtattgcccaagagaggccttaagaagagtttccaaaattctcaaaga |
101 |
Q |
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|||||||||| |||||||| ||| ||||| | ||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
12605 |
aagatgaaattgttttaggtgatttgaatctacaacctggtcaagcatgggaatattgcccaagagaggccttaagaagagtctccaaaattctcaaaga |
12506 |
T |
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| Q |
102 |
tgaatttgacttggtatgttgca |
124 |
Q |
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|||||||||||||||||| |||| |
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| T |
12505 |
tgaatttgacttggtatggtgca |
12483 |
T |
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