View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_107 (Length: 240)
Name: NF16569_low_107
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_107 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 35802890 - 35802669
Alignment:
| Q |
19 |
gttattgtccggattgacagtgtaggaggaaattttcgtgcatctcagtcaacgttggaggcaatcggatctcttgcttccaaaatccccgtcattactt |
118 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||| ||||||||||||| |||| ||||||||| ||| |
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| T |
35802890 |
gttattgtccggattgacagtgtaggaggtgattttcatgcatctcagtcaacgtgggaggcaatcagatctcttgcttcaaaaaaacccgtcattgctt |
35802791 |
T |
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| Q |
119 |
caatgtctgatgtggcaataagtgcaggatactacatggcaatgggagcaggagctatcgtagcagaaaatcttactttaaccggttcaattcgaggaag |
218 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35802790 |
caatgtctgatgcggcaacaagtgcaggatactacatggcaatgggagcaggagctatcgtagcagaaaatcttactttaactggttcaattcgaggaac |
35802691 |
T |
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| Q |
219 |
ggtttctcaaaactttaacctt |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
35802690 |
ggtttctcaaaactttaacctt |
35802669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 10521033 - 10521109
Alignment:
| Q |
117 |
ttcaatgtctgatgtggcaataagtgcaggatactacatggcaatgggagcaggagctatcgtagcagaaaatctta |
193 |
Q |
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||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
10521033 |
ttcaatgtctgatgtagcagcaagtgcaggatactacatggcaacgggagcaggagatatcgtagcagaaaatctta |
10521109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 109 - 210
Target Start/End: Complemental strand, 45878771 - 45878670
Alignment:
| Q |
109 |
gtcattacttcaatgtctgatgtggcaataagtgcaggatactacatggcaatgggagcaggagctatcgtagcagaaaatcttactttaaccggttcaa |
208 |
Q |
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|||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| || ||||||| ||| || ||||| ||||||| |
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| T |
45878771 |
gtcattgcttcaatgtctgatgtggcagcaagtggaggatactacatggcaatgggagcaggagctattgttgcagaaagtctaaccttaactggttcaa |
45878672 |
T |
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| Q |
209 |
tt |
210 |
Q |
| |
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|| |
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| T |
45878671 |
tt |
45878670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 210
Target Start/End: Original strand, 55705578 - 55705700
Alignment:
| Q |
88 |
tctcttgcttccaaaatccccgtcattacttcaatgtctgatgtggcaataagtgcaggatactacatggcaatgggagcaggagctatcgtagcagaaa |
187 |
Q |
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| T |
55705578 |
tctcttgctgcccaaaaacctgtcattgcttcaatgtatgacgtggcagccagtgcaggatagtacatggcaatgggagctggaataatagtagcagaaa |
55705677 |
T |
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| Q |
188 |
atcttactttaaccggttcaatt |
210 |
Q |
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||||||| ||||| ||||||||| |
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| T |
55705678 |
atcttacattaactggttcaatt |
55705700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 47293221 - 47293289
Alignment:
| Q |
142 |
gcaggatactacatggcaatgggagcaggagctatcgtagcagaaaatcttactttaaccggttcaatt |
210 |
Q |
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| T |
47293221 |
gcaggatactacgtggcaatgggcgcaggagttattgttgcagaaaatcttaccttaactggttcaatt |
47293289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 200
Target Start/End: Complemental strand, 56208972 - 56208881
Alignment:
| Q |
109 |
gtcattacttcaatgtctgatgtggcaataagtgcaggatactacatggcaatgggagcaggagctatcgtagcagaaaatcttactttaac |
200 |
Q |
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|||||| |||| |||||| || || || ||||| ||||||| ||||||||||||||||||||| ||| || |||||||||||||| ||||| |
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| T |
56208972 |
gtcattgcttcgatgtctcatatgacagcaagtggaggataccacatggcaatgggagcaggagttattgttgcagaaaatcttaccttaac |
56208881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 153
Target Start/End: Original strand, 54304073 - 54304116
Alignment:
| Q |
110 |
tcattacttcaatgtctgatgtggcaataagtgcaggatactac |
153 |
Q |
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||||| ||||||| ||||||||||||| |||||||||||||||| |
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| T |
54304073 |
tcattgcttcaatatctgatgtggcaacaagtgcaggatactac |
54304116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 45860254 - 45860198
Alignment:
| Q |
110 |
tcattacttcaatgtctgatgtggcaataagtgcaggatactacatggcaatgggag |
166 |
Q |
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||||| |||||||||||||||||||| |||| ||||||||| ||||| ||||||| |
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| T |
45860254 |
tcattgcttcaatgtctgatgtggcagctagtggaggatactatatggcgatgggag |
45860198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 210
Target Start/End: Complemental strand, 7972537 - 7972415
Alignment:
| Q |
88 |
tctcttgcttccaaaatccccgtcattacttcaatgtctgatgtggcaataagtgcaggatactacatggcaatgggagcaggagctatcgtagcagaaa |
187 |
Q |
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|||||||||||||||| || || ||| ||| ||||||||| ||||||| || ||||||||||||||||||||||| ||||||| ||| || ||||||| |
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| T |
7972537 |
tctcttgcttccaaaaaaccagttattgctttgatgtctgatctggcaatgagcgcaggatactacatggcaatgggcgcaggagttattgttgcagaaa |
7972438 |
T |
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| Q |
188 |
atcttactttaaccggttcaatt |
210 |
Q |
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| ||||| ||||| ||||||||| |
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| T |
7972437 |
accttaccttaactggttcaatt |
7972415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 210
Target Start/End: Original strand, 24354011 - 24354112
Alignment:
| Q |
109 |
gtcattacttcaatgtctgatgtggcaataagtgcaggatactacatggcaatgggagcaggagctatcgtagcagaaaatcttactttaaccggttcaa |
208 |
Q |
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|||||| |||| ||| ||||||||||| ||||| |||||||||||||||||||||| | | ||||| || ||||||| |||||| ||||| ||||||| |
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| T |
24354011 |
gtcattgcttcgatggctgatgtggcagcaagtggaggatactacatggcaatgggaactgatgctattgttgcagaaagtcttaccttaactggttcaa |
24354110 |
T |
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| Q |
209 |
tt |
210 |
Q |
| |
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|| |
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| T |
24354111 |
tt |
24354112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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