View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_109 (Length: 239)
Name: NF16569_low_109
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_109 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 2918868 - 2919089
Alignment:
| Q |
2 |
aacaacgtcgtactaagacaactaaatcataaaaacatactaaagaagacttaaatcatgtggaaatcacttatttaactnnnnnnnnnnnnnnnnnnca |
101 |
Q |
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||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
2918868 |
aacaacgtcgtactaagacgactaaatcataaaaacataccaaagaagacttaaatcatgtggaaatcacttatttaac-caaaaaaagaaagaaaaaca |
2918966 |
T |
|
| Q |
102 |
atttggagtggtgatttcggaacaaaattaaacctaaaccacccttcatttgtaaggagaaaagggagttgtttaattatactttagatatattgttgtt |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
2918967 |
atttggagtggtgatttcggaacaaaattaaacctaaaccacccttcatttgtaaggagaaaagggagttgtttaattacactttagatatattgtcgtt |
2919066 |
T |
|
| Q |
202 |
atcttatattgatggttatatgt |
224 |
Q |
| |
|
|||||| ||||||| |||||||| |
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|
| T |
2919067 |
atcttacattgatgcttatatgt |
2919089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 2924177 - 2924399
Alignment:
| Q |
1 |
gaacaacgtcgtactaagacaactaaatcataaaaacatactaaagaagacttaaatcatgtggaaatcacttatttaactnnnnnnnnnnnnnnnnnnc |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
2924177 |
gaacaacgtcgtactaagacgactaaatcataaaaacataccaaagaagacttaaatcatgtggaaatcacttatttaac-caaaaaaagaaagaaaaac |
2924275 |
T |
|
| Q |
101 |
aatttggagtggtgatttcggaacaaaattaaacctaaaccacccttcatttgtaaggagaaaagggagttgtttaattatactttagatatattgttgt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| | || |||||||||| || |
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| T |
2924276 |
aatttggagtggtgatttcggaacaaaattaaacctaaaccacccttcatttgtaaggagaaaagggagtgtttaaattagagctttgatatattgtcgt |
2924375 |
T |
|
| Q |
201 |
tatcttatattgatggttatatgt |
224 |
Q |
| |
|
||||| | ||||||||||||||| |
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| T |
2924376 |
tatctgactttgatggttatatgt |
2924399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 31359224 - 31359168
Alignment:
| Q |
25 |
aaatcataaaaacatactaaagaagacttaaatcatgtggaaatcacttatttaact |
81 |
Q |
| |
|
||||||||||||| ||| ||||||||||| ||| ||||||||||| ||||||||||| |
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| T |
31359224 |
aaatcataaaaacgtaccaaagaagacttcaattatgtggaaatcgcttatttaact |
31359168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 31348546 - 31348491
Alignment:
| Q |
26 |
aatcataaaaacatactaaagaagacttaaatcatgtggaaatcacttatttaact |
81 |
Q |
| |
|
|||||| ||||| ||| ||||||||||||| | ||||||||||||||||||||||| |
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|
| T |
31348546 |
aatcattaaaacttaccaaagaagacttaatttatgtggaaatcacttatttaact |
31348491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 31359049 - 31358982
Alignment:
| Q |
155 |
aaggagaaaagggagttgtttaattatactttagatatattgttgttatcttatattgatggttatat |
222 |
Q |
| |
|
||||||||||| |||| ||||||||| | ||||| ||||||| ||||||||| ||||||||||||| |
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|
| T |
31359049 |
aaggagaaaagcgagtggtttaattacgccttagaaatattgtcgttatcttactttgatggttatat |
31358982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 4219280 - 4219224
Alignment:
| Q |
25 |
aaatcataaaaacatactaaagaagacttaaatcatgtggaaatcacttatttaact |
81 |
Q |
| |
|
|||||||||||||| || |||||| ||| ||| ||||| ||||||||||||||||| |
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|
| T |
4219280 |
aaatcataaaaacaaacgaaagaaaactgaaaatatgtgaaaatcacttatttaact |
4219224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 26905666 - 26905715
Alignment:
| Q |
32 |
aaaaacatactaaagaagacttaaatcatgtggaaatcacttatttaact |
81 |
Q |
| |
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||||||| || |||||||||| ||| ||||||||||||||||||||||| |
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|
| T |
26905666 |
aaaaacaaacgaaagaagactgaaaatatgtggaaatcacttatttaact |
26905715 |
T |
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