View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16569_low_111 (Length: 238)
Name: NF16569_low_111
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_111 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 15394126 - 15394327
Alignment:
| Q |
21 |
aattcgaccagccaatggatgcagaagcaggaaggctcaaaaatatgtacagagaaaaagtatgatgcaatgaattctattttgtttacataggatactg |
120 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15394126 |
aatttgaccagccaatggatgcagaagcaggaaggctcaaaaatatgtacagagaaaaagtatgatgcaatgaattctattttgtttacataggatactg |
15394225 |
T |
|
| Q |
121 |
caatttgcaacgttgaaattttgatgtctacaacatgtcttttaagtgattttaagtaatttttcgatctatgttattttgatttgtttcagaagttttc |
220 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15394226 |
caatttgcaactttgaaattttgatgtctacaacatgtcttttaagtgattttaagtaatttttcgatctatgttaatttgatttgtttcagaagttttc |
15394325 |
T |
|
| Q |
221 |
tg |
222 |
Q |
| |
|
|| |
|
|
| T |
15394326 |
tg |
15394327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 26 - 222
Target Start/End: Original strand, 15385696 - 15385893
Alignment:
| Q |
26 |
gaccagccaatggatgcagaagcaggaaggctcaaaaatatgtacagagaaaaagtatgatgcaatgaattctattttgtttacataggatactgcaatt |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15385696 |
gaccagccaatggatgcagaagcaggaaggctcagaaatatgtacagagaaaaagtatgatgcaatgaattctattttgtttacataggaaactgcaatt |
15385795 |
T |
|
| Q |
126 |
tgcaacgttgaaattttgatgtctacaacatgtcttttaagtgattttaagtaa-tttttcgatctatgttattttgatttgtttcagaagttttctg |
222 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15385796 |
tgcaactttgaaattttgatgtctacgacatgtctgttaagtgattttaagtaattttttcgatctatgttattttgatttgtttcagaagttttctg |
15385893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 38669738 - 38669678
Alignment:
| Q |
26 |
gaccagccaatggatgcagaagcaggaaggctcaaaaatatgtacagagaaaaagtatgat |
86 |
Q |
| |
|
|||||||| ||||| | ||| |||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
38669738 |
gaccagcctatggaggaagaggcaggaagactcaggaatatgtacagagaaaaagtatgat |
38669678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University