View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_113 (Length: 238)
Name: NF16569_low_113
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_113 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 10239082 - 10239301
Alignment:
| Q |
19 |
cgaaaatcatgtcaagaggattaatttcaagctgtatatcagcgaacacagcgtannnnnnngtaattgcgaaatcatgaagaaaagaaggtcttttctt |
118 |
Q |
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| T |
10239082 |
cgaaaatcatgtcaagaggattaatttcaagctgtatatcagcgaacaaagcgtatttttttgtaattgcgaaatcatgaagaaaagaaggtcttttcat |
10239181 |
T |
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| Q |
119 |
ggagaaaactggaacgtcattgtgtttaactccatttgaatcaaaacggaaataggttaaaaaaggtcgaatgagaccgtaacggtaagcgaaacattca |
218 |
Q |
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| T |
10239182 |
ggagaaaactggaacgtcattgtgtttaactccatttgaatcaaaacggaaataggttaaaaaaggtcgaatgagaccgtagcggtaagcgaaacattca |
10239281 |
T |
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| Q |
219 |
cctgtgtcggagtcaatttt |
238 |
Q |
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| T |
10239282 |
cctgtgtcggagtcaatttt |
10239301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 10230302 - 10230521
Alignment:
| Q |
19 |
cgaaaatcatgtcaagaggattaatttcaagctgtatatcagcgaacacagcgtannnnnnngtaattgcgaaatcatgaagaaaagaaggtcttttctt |
118 |
Q |
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||||||||||| |||||||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||| | |
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| T |
10230302 |
cgaaaatcatgccaagaggattcatttcaagctgtatatcagcgaacacagcatattttttagtaatggcgaaatcatgaagaaacgaaggtcttttcat |
10230401 |
T |
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| Q |
119 |
ggagaaaactggaacgtcattgtgtttaactccatttgaatcaaaacggaaataggttaaaaaaggtcgaatgagaccgtaacggtaagcgaaacattca |
218 |
Q |
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| T |
10230402 |
ggagaatactggaacgtcgttatgtttaacaccattcgaatcaaaacggaaataggttaaaaaaggtcgaatgggaccataacggaaagcgaaacattca |
10230501 |
T |
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| Q |
219 |
cctgtgtcggagtcaatttt |
238 |
Q |
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| T |
10230502 |
cttgtgtcagagtctatttt |
10230521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 22 - 238
Target Start/End: Complemental strand, 10255520 - 10255304
Alignment:
| Q |
22 |
aaatcatgtcaagaggattaatttcaagctgtatatcagcgaacacagcgtannnnnnngtaattgcgaaatcatgaagaaaagaaggtcttttcttgga |
121 |
Q |
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| T |
10255520 |
aaatcatgtcaagaggattcattccaagctgaatatccgtaaacacagcgtattttttagtaatggcgaaatcatgaagaaaagaaggtcttgtcatgga |
10255421 |
T |
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| Q |
122 |
gaaaactggaacgtcattgtgtttaactccatttgaatcaaaacggaaataggttaaaaaaggtcgaatgagaccgtaacggtaagcgaaacattcacct |
221 |
Q |
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| T |
10255420 |
gaaaaccggaacgtcgttatgtttaacaccatttgcatcaaaacggaaataggttaaaaatggtggcataggaccgtaacggaaagcaaaagtttcacct |
10255321 |
T |
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| Q |
222 |
gtgtcggagtcaatttt |
238 |
Q |
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| T |
10255320 |
gtgtcgccgtcaatttt |
10255304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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