View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_117 (Length: 231)
Name: NF16569_low_117
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_117 |
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| [»] scaffold0618 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 39509443 - 39509272
Alignment:
| Q |
20 |
cgaatctcattgggtgtcttttgttaattgttgtatcttcaattggaacttcaagttattagctaacggtgagcatggatagattgaatgcacaattttt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39509443 |
cgaatctcattgggtgtcttttgttaattgttgtatcttcaattgaaacttcaagttattagctaacggtgagcatggatagattgaatgcacaattttt |
39509344 |
T |
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| Q |
120 |
gttccattgtggttttcaggactggcattgtgttccaatggaaaataagtcgaaaatatggagatttgtcaa |
191 |
Q |
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| T |
39509343 |
gttccattgtggttttcaggactggcattgtgttccaatggaaaatcattctaaattatggagatttgtcaa |
39509272 |
T |
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Target: scaffold0618 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 2901 - 3015
Alignment:
| Q |
21 |
gaatctcattgggtgtcttttgttaattgttgtatcttcaattggaacttcaagttattagctaacggtgagcatggatagattgaatgcacaatttttg |
120 |
Q |
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| T |
2901 |
gaatctcattgtgtgccttttgttaattgttgtatcatccattgaaacttcgagttattggctaacaatgaacatggatagattgaatgcacaatttttg |
3000 |
T |
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| Q |
121 |
ttccattgtggtttt |
135 |
Q |
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| T |
3001 |
ttccattgtggtttt |
3015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 29258571 - 29258685
Alignment:
| Q |
21 |
gaatctcattgggtgtcttttgttaattgttgtatcttcaattggaacttcaagttattagctaacggtgagcatggatagattgaatgcacaatttttg |
120 |
Q |
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| T |
29258571 |
gaatctcattgtgtgccttttgttaattgttgtatcatccattgaaacttcgagttattggctaacaatgaacatggatagattgaatgcacaatttttg |
29258670 |
T |
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| Q |
121 |
ttccattgtggtttt |
135 |
Q |
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| T |
29258671 |
ttccattgtggtttt |
29258685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 125
Target Start/End: Original strand, 25989317 - 25989409
Alignment:
| Q |
33 |
gtgtcttttgttaattgttgtatcttcaattggaacttcaagttattagctaacggtgagcatggatagattgaatgcacaatttttgttcca |
125 |
Q |
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| T |
25989317 |
gtgtcttttcttaattgttgtatcttcaattggagcttcaggttgttggctaacagggagcatgtctagataaggtgcacaatttttgttcca |
25989409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 37111053 - 37110939
Alignment:
| Q |
22 |
aatctcattgggtgtcttttgttaattgttgtatcttcaattggaacttcaagttattag-ctaacggtgagcatggatagattgaatgcacaatttttg |
120 |
Q |
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|||||||||| ||||||| |||| ||| ||| ||||||||||||| |||| || || | ||||| |||||||||||| ||||| || | |||| |||| |
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| T |
37111053 |
aatctcattgtgtgtcttgtgttgattattggatcttcaattggactttcagcttcttgggctaacagtgagcatggatggattggatacgcaatctttg |
37110954 |
T |
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| Q |
121 |
ttccattgtggtttt |
135 |
Q |
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| T |
37110953 |
ttccattgtggtttt |
37110939 |
T |
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