View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_120 (Length: 222)
Name: NF16569_low_120
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_120 |
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| [»] scaffold0604 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 205
Target Start/End: Complemental strand, 13227784 - 13227590
Alignment:
| Q |
11 |
catcatcaaattcttgatctacagagcgttttccacttaaaatttccattaataccactccatagctgtatatgtcactcttctcatcaacttggagtgt |
110 |
Q |
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| T |
13227784 |
catcaccaaattcttgatctacagagcgttttccacttaaaatttccattaataccactccatagctgtatatgtcactcttctcatcaacttggagtgt |
13227685 |
T |
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| Q |
111 |
ataagcatattctgcaaaattcaaacaacacccttttattattatcatgtacgattaagtaattaatagttccataataagaccaaacacacact |
205 |
Q |
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| T |
13227684 |
ataagcatattctgcaaaattcaaacaacacccttttattattatcatgtacgattaagtaattaatagttccataataagaccaaacacacact |
13227590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 13146613 - 13146729
Alignment:
| Q |
13 |
tcatcaaattcttgatctacagagcgttttccacttaaaatttccattaataccactccatagctgtatatgtcactcttctcatcaacttggagtgtat |
112 |
Q |
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| T |
13146613 |
tcatcaaattcttgatctagaacgcgttttccacttaaaatttccattaaaaccactccatagctgtaaatatcaatcttctcattaacttggagggtat |
13146712 |
T |
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| Q |
113 |
aagcatattctgcaaaa |
129 |
Q |
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| T |
13146713 |
caacatattctgtaaaa |
13146729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 37 - 129
Target Start/End: Original strand, 13313862 - 13313954
Alignment:
| Q |
37 |
cgttttccacttaaaatttccattaataccactccatagctgtatatgtcactcttctcatcaacttggagtgtataagcatattctgcaaaa |
129 |
Q |
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| T |
13313862 |
cgttttccacttataagttccattaaaaccactccgtagctgtaaatatcagttttctcatcaacttggagtctttcagcattttctgcaaaa |
13313954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 35781071 - 35781109
Alignment:
| Q |
63 |
taccactccatagctgtatatgtcactcttctcatcaac |
101 |
Q |
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| T |
35781071 |
taccactccataactgtatatgtcaatcttctcatcaac |
35781109 |
T |
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Target: scaffold0604 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0604
Description:
Target: scaffold0604; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 5910 - 5974
Alignment:
| Q |
13 |
tcatcaaattcttgatctacagagcgttttccacttaaaatttccattaataccactccatagct |
77 |
Q |
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| T |
5910 |
tcatcaaattcttgatcttccacacgctttccacttaatatttccattaagatcactccatagct |
5974 |
T |
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