View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_121 (Length: 222)
Name: NF16569_low_121
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_121 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 23 - 203
Target Start/End: Original strand, 41011791 - 41011971
Alignment:
| Q |
23 |
cgtggatagtccattgtctagtgaaagtagtatgatcatagaaggtatgagcagagtttgtccatatagcccagaagaaaagaaagtgagaattgaaaga |
122 |
Q |
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| T |
41011791 |
cgtggatagtccattgtctagtgaaagtagtatgatcatagaaggtatgagcagagtttgtccatatagcccagaagaaaagaaagtgagaattgaaaga |
41011890 |
T |
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| Q |
123 |
tacagaataaagaggaatcagaggaactttaacaagaaaattaaggttaactcttgtacaaaatacacacatggcacatct |
203 |
Q |
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| T |
41011891 |
tacagaataaagaggaatcagaggaactttaacaagaaaattaaggttaactcttgtacaaaatacacacatggcacatct |
41011971 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 172
Target Start/End: Original strand, 22890673 - 22890755
Alignment:
| Q |
90 |
agcccagaagaaaagaaagtgagaattgaaagatacagaataaagaggaatcagaggaactttaacaagaaaattaaggttaa |
172 |
Q |
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| T |
22890673 |
agcccagaggaaaagaaggtgaggattgagagatatagaagcaagaaaaatcagaggaactacaataagaaaattaaggttaa |
22890755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 172
Target Start/End: Original strand, 22942337 - 22942419
Alignment:
| Q |
90 |
agcccagaagaaaagaaagtgagaattgaaagatacagaataaagaggaatcagaggaactttaacaagaaaattaaggttaa |
172 |
Q |
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|||||||| |||||||| ||||| ||||| ||||| |||| |||| ||||||||||||| || ||||||||||||||||| |
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| T |
22942337 |
agcccagaggaaaagaaggtgaggattgagagatatagaagcaagaaaaatcagaggaactacaataagaaaattaaggttaa |
22942419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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