View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_122 (Length: 221)
Name: NF16569_low_122
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_122 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 121552 - 121332
Alignment:
| Q |
1 |
ctatctaatctaaacttctcctataatacctactctatcaaaagctatcagtccttcccttatattaattatattaaaaggtactttatagtactattgt |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
121552 |
ctatctaatctaaacttctcctataatatctactctatcaaaagctatcagtccttcccttatattaattatattaaaaggtactttatagtactattgt |
121453 |
T |
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| Q |
101 |
aagatttcatggggaaatgtcaacttccctttattttgctcgataaccatgcatattatgtattgttcaaagaacacaatacaattgctcactttaacta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
121452 |
aagatttcatggggaaatgtcaacttccctttatttttttcgataaccatgcatattatgtattgttcaaagaacacaatacaattgctcactttaacta |
121353 |
T |
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| Q |
201 |
cacacattttctgtttcattc |
221 |
Q |
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|||| |||||||||||||||| |
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| T |
121352 |
cacatattttctgtttcattc |
121332 |
T |
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