View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_13 (Length: 555)
Name: NF16569_low_13
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 20 - 545
Target Start/End: Complemental strand, 41468425 - 41467899
Alignment:
| Q |
20 |
cactggagatagtgaaaagtgaaa-cagtgaaacaaaggaaagcaagtaatgtcaggtgtatgggtatttgacaagaaaggtgtggtgaggttaataacc |
118 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41468425 |
cactggagatagtgaaaagtgaaaacagtgaaacaaaggaaagcaagtaatgtcaggtgtatgggtatttgacaagaaaggtgtggtgaggttaataacc |
41468326 |
T |
|
| Q |
119 |
aacccaacaagagaatcctttgagcacaagacagaaccaggaacaggaacagcaacagcaccaggtgcaagaccaagaattcttgtatatcttccaacaa |
218 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41468325 |
aacccaacaagagaatccttcgagcacaagacagaaccaggaacaggaacagcaacagcaccaggtgcaagaccaagagttcttgtatatcttccaacaa |
41468226 |
T |
|
| Q |
219 |
accaagtcattcattccttctctcaacttgagcaacgactcactgaacttggttggactcgttactctcactctcatcttccagaccacatccagtttca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41468225 |
accaagtcattcattccttctctcaacttgagcaacgactcactgaacttggttggactcgttactctcactctcatcttccagaccacatccagtttca |
41468126 |
T |
|
| Q |
319 |
tcgttcagacacatctccacaccttctatcactcccaagaaacttcagtagttttaagcactttcatatgtacgacattgttattcaaaaccgttcnnnn |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41468125 |
tcgttcagacacatctccacaccttctatcactcccaagaaacttcaatagttttaagcactttcatatgtacgacattgttattcaaaaccgttctttt |
41468026 |
T |
|
| Q |
419 |
nnncaagttcgtgaccctacttcttagttcttactactaagcctatacgtagcttcattttgtcttttatcatcatcttgatcgtgcattgttagttagc |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41468025 |
tttcaagttcgtgaccctacttcttagttcttactactaagcctatacgtagcttcattttgtcttttatcatcatcttgatcgtgcattgttagttagc |
41467926 |
T |
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| Q |
519 |
taggnnnnnnnttcctcttgccctatg |
545 |
Q |
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|||| |||||||||||||||| |
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| T |
41467925 |
taggaaaaaaattcctcttgccctatg |
41467899 |
T |
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