View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_137 (Length: 201)
Name: NF16569_low_137
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_137 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 21107253 - 21107436
Alignment:
| Q |
1 |
gattctgatggtaatttaagggtgtatagtagaattaatgtgtcacaaaattggtatgtttcatggcaagccatttatggtgcttgcatagctcatggga |
100 |
Q |
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| T |
21107253 |
gattctgatggtaatttaagggtgtatagtagaattaatgtgtcacaaaattggtatgtttcatggcaagccatttatggtgcttgcatagctcatggga |
21107352 |
T |
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| Q |
101 |
tttgtggagataatagcacatgtagttataatcctaagcatggaagaaaatgttcttgtattccagggtatagagtgaagaacc |
184 |
Q |
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| T |
21107353 |
tttgtggagataatagcacatgtagttataatcctaagcatggaagaaaatgttcttgtattccagggtatagagtgaagaacc |
21107436 |
T |
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Target: chr7; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 21097634 - 21097812
Alignment:
| Q |
1 |
gattctgatggtaatttaagggtgtatagtagaattaatgtgtcacaaaattggtatgtttcatggcaagccatttatggtgcttgcatagctcatggga |
100 |
Q |
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| T |
21097634 |
gattctgatggtgttgtgagagtgtatagcagaacgaatgtgtcacagaattggtatgtttcatggcaagcctttacaggtacttgtttagttcatggaa |
21097733 |
T |
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| Q |
101 |
tttgtggagataatagcacatgtagttataatcctaagcatggaagaaaatgttcttgtattccagggtatagagtgaa |
179 |
Q |
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| T |
21097734 |
tttgtggagctaatagtacatgtagttatagtcctaagattggaagaaaatgctcttgtattccagggtatagaatgaa |
21097812 |
T |
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