View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_19 (Length: 522)
Name: NF16569_low_19
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 19 - 509
Target Start/End: Original strand, 39021459 - 39021966
Alignment:
| Q |
19 |
ctttatagatataactatattcttcatagatataactatgagactaatttatcctgtcatgttcatat----------------aaagttcgtatagact |
102 |
Q |
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| T |
39021459 |
ctttatagatataactatattctttatagatataactataagactaatttatcctgtcatgttcatatcacaaacacttcagataaagttcgtatagact |
39021558 |
T |
|
| Q |
103 |
tatcgtttagttgtgcatggaactactagatgtgtgtatattatatcatagcatactagtaactaaactgtaatatttgagaaaatgaataaactttttg |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39021559 |
tatcgtttagttgtgcatggaactactagatgtgtgtatattatatcatagcatactagtaactaaactgtaatatttgagaaaatgaataaactttttg |
39021658 |
T |
|
| Q |
203 |
agggnnnnnnnnnt-gagaaacttgatttgcaataaattaccacaacggccttgatctttgacttgtgtaactgcacctttctttctccaatctatgatt |
301 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
39021659 |
aggcaaaaaaaaaaagagaaacttgatttgcaataaattaccacaacggccttgatctttgacgtgtgtaactgcacctttctttctccaatctatgctt |
39021758 |
T |
|
| Q |
302 |
ttcggtagttctccatgtttatgatacctgaattccgtttgtacacgaaaccgaggcagaaaacctagataggtgcttttgaactcttcattagtaagat |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
39021759 |
ttcggtagttctccatgtttatgatacctgaattccgtttgtacacgaaaccggggcagataacctagataggtgcttttgaactcttcattagtaatat |
39021858 |
T |
|
| Q |
402 |
ctgcaaacctgttgtctatgagcttgtaagaatagttttgagagttgtagaactctatatactgaacatttgattggtagatgtcgaaacgaacttccca |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39021859 |
ctgcaaacctgttgtctatgagcttgtaagaatagttttgagagttgtagaactctatatactgaacatttgattggtagatgtcgaaacgaacttccca |
39021958 |
T |
|
| Q |
502 |
ttcttctc |
509 |
Q |
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|||||||| |
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| T |
39021959 |
ttcttctc |
39021966 |
T |
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