View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16569_low_2 (Length: 844)
Name: NF16569_low_2
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 86 - 527
Target Start/End: Original strand, 19931120 - 19931578
Alignment:
| Q |
86 |
ataacaataacatcacgtgggtgaaattatagaaaagaaaaggtcccaaccaaccaacaaaacctaagtttctcaacaagctagaggtggtgtctcaata |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19931120 |
ataacaataacatcacgtgggtgaaattatagaaaagaaaaggtcccaaccaaccaacaaaacctaagtttctcaacaagctagcggtggtgtctcaata |
19931219 |
T |
|
| Q |
186 |
tttatttgcacgcgttactcgtttctttgtatacttg--tctctctcaactatgtcttttacgtgtccatttgtcaactctc-----------aattctt |
272 |
Q |
| |
|
||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19931220 |
tttttttgcacgcgttactcgtttctttttatacttgtctctctctcaactatgtcttttacgtgtccatttgtcaactctcactaaaatctaaattctt |
19931319 |
T |
|
| Q |
273 |
tacaataatgtttctctattggactctctaagaataaatcaataccactacacttaaaactatacttattttaatttgcccattgtattgttcaataaaa |
372 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19931320 |
tacaataatgtttcttaattcgactctctaagaataaatcaataccactacacttaaaattatacttcttttaatttgcccattgtattgttcaataaag |
19931419 |
T |
|
| Q |
373 |
taataatagtgaaccaaacccattatatatatcacatgccattcccttcc----acatctcatcatattcccaaactgcnnnnnnnnncataaaacaaat |
468 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19931420 |
taatattagtgaaccaaacccattatatatatcacatgccattcccttccttctacatctcatcatattcccaaactgcaaaaagaaacataaaacaaat |
19931519 |
T |
|
| Q |
469 |
cgatatgagtttttcttttcatcaagattctctttctcttcaatctaccatgtctacaa |
527 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19931520 |
cgaaatgagtttttattttcatcaagattctctttctcttcaatctaccatgtctacaa |
19931578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 590 - 844
Target Start/End: Original strand, 19931641 - 19931895
Alignment:
| Q |
590 |
atctcaagaattaagccatggtgtaattgcaacacttgcaaaacattcttaaccatgagttggtccaataaatttgtaaaccttgtggattattatacac |
689 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19931641 |
atctcaagaatcaagccatggtgtaattgcaacacttgcaaaacattcttaaccatgagttggtccaataaatttgtaaaccttgtggattattatacac |
19931740 |
T |
|
| Q |
690 |
atcttcttcaagaatcaccaacaggaacaattcatgtgcatgtgttgggtaacacaataacctcaaatccagaaaacgtggagtatatactcaaaacaaa |
789 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19931741 |
atcttcttcaagaatcaccaacaggaacaattcatgtgcatgtgttgggtaacacaataacctcaaatccagaaaacgtggagtatatactcaaaacaaa |
19931840 |
T |
|
| Q |
790 |
tttcaacaattaccctaaaggtaaacaattttctacaatccttggtgatcttctt |
844 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19931841 |
tttcaacaattaccctaaaggtaaacaattctctacaatccttggtgatcttctt |
19931895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 19931007 - 19931087
Alignment:
| Q |
6 |
agcagcacagaggcacagttacaacatcctatgcaaatccatttaatacaccctatcgacagagcagcagaataaaaacaa |
86 |
Q |
| |
|
|||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19931007 |
agcaacacaaaggcacagttacaacatcctatacaaatccatttaatacaccctatcgacagagcagcagaataaaaacaa |
19931087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University