View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_22 (Length: 503)
Name: NF16569_low_22
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 18 - 488
Target Start/End: Complemental strand, 14257665 - 14257195
Alignment:
| Q |
18 |
catagaaggatcttgagaaattgtatcactaaatgaatataaacgattagagaaagaagaacaatgtgatacaccaattgaatgtgctcctgagagtgta |
117 |
Q |
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| T |
14257665 |
catagaaggatcttgagaaattgtatcactaaatgaatataaacgattagagaaagaagaacaatgtgatacaccaattgaatgtgctcctgagagtgta |
14257566 |
T |
|
| Q |
118 |
accatttcatcaattgacaaacctttttgtgcaaaatttgctataagttggtcagcgttgaggaaaggtgaaggtatattttttggcacttcgtcgctga |
217 |
Q |
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| T |
14257565 |
accatttcatcaattgacaaacctttttgtgcaaaatttgctataagttggtcagcattgaggaaaggtgaaggtatattttttggcacttcgtcgctga |
14257466 |
T |
|
| Q |
218 |
ttgagacacggccatccctccgtccggaaggtacatcgtaatttatagtgccaccactaagtttgagaatactgtctcgtgtcgcaaatgtaagaatgtc |
317 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14257465 |
ttgagacacggccatccctccgtcctgaaggtacatcgtaatttatagtgccaccactaagtttgagaatactgtctcgtgtagcaaatgtaagaatgtc |
14257366 |
T |
|
| Q |
318 |
cgcacacgatactgtttgcggacattcgacttctaattgagccttggcctcatcaattacctcaaatccatgtagacttggattgttgataaagttgtct |
417 |
Q |
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| T |
14257365 |
cgcacacgatactgtttgcggacatacgacttctaattgagccttggcctcatcaattacctcaaatccatgtagacttggattgttgataaagttgtct |
14257266 |
T |
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| Q |
418 |
ttctcagctattggatttcctggtgttgatgctagtaacacagaagcatcacaaccctgtacatagaattt |
488 |
Q |
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| T |
14257265 |
ttctcagctattggatttcctggtgttgatgctagtaacacagaagcatcacaaccctatacatagaattt |
14257195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 38697106 - 38697232
Alignment:
| Q |
18 |
catagaaggatcttgagaaattgtatcactaaatgaatataaacgattagagaaagaagaacaatgtgatacaccaattgaatgtgctcctgagagtgta |
117 |
Q |
| |
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||||||||||||||||| || || || | || || ||||| || || ||||| |||||||||||||| |||||||| ||||| || || || |||||| |
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| T |
38697106 |
catagaaggatcttgaggaaaagttgcattgaaagagtataatcgttttgagaatgaagaacaatgtgagacaccaatagaatgagcaccagaaagtgta |
38697205 |
T |
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| Q |
118 |
accatttcatcaattgacaaacctttt |
144 |
Q |
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| T |
38697206 |
accatttcatctactgacaaacctttt |
38697232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 67 - 144
Target Start/End: Complemental strand, 38629126 - 38629049
Alignment:
| Q |
67 |
gagaaagaagaacaatgtgatacaccaattgaatgtgctcctgagagtgtaaccatttcatcaattgacaaacctttt |
144 |
Q |
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||||| |||||||||||||| |||||||| ||||| || || || ||||||||||||||||| | ||||||||||||| |
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| T |
38629126 |
gagaatgaagaacaatgtgagacaccaatagaatgagcaccagaaagtgtaaccatttcatctactgacaaacctttt |
38629049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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