View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_23 (Length: 503)
Name: NF16569_low_23
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_23 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 503
Target Start/End: Complemental strand, 5920606 - 5920125
Alignment:
| Q |
18 |
atcaaatctgttcgtgttaatcttccaaataatacttctatcattgttcattttgctggtaatgttgttttcaatcctcagttttatcttaccaatgtgt |
117 |
Q |
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| T |
5920606 |
atcaaacctgttcgtgttaatcttccaaataatacttctatcattgttcattttgctggtaatgttgttttcaatcctcagttttatcttaccaatgtgt |
5920507 |
T |
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| Q |
118 |
tatattcaccattgtgtcagatgaatctcatgtctgttactaaactttgtgagtcattatcttgtgttttgaacttttctcatggcatgcaaatgccttg |
217 |
Q |
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| T |
5920506 |
tatattcaccattgtgttagatgaatctcatgtctgttactaaactttgtgagtcattatcttgtgttttgaacttttctcatggca----aatgcctta |
5920411 |
T |
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| Q |
218 |
tacatgaccaaacttcactgaagatgattggtttggctaatcaagtggctggtctttacatatatactgctgattctcatgttttttcaactagttttat |
317 |
Q |
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| T |
5920410 |
tgcaggaccaaacttcattgaagatgattggtttggctaatcaagtggctggtctttacaaatatactcctgcttatgatgtttgttcaattagttttat |
5920311 |
T |
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| Q |
318 |
gcattcccccaataaatcttgtaatttttcttcttctatcagttgtaattcaagcaattgtattccagttactgccttatggcacttaaggcttggtcat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
5920310 |
gcattcccccaataaatcttgtaatttttcttcttctatcagttgtgattcaagcaattgtattccagttactgccttatggcacttaagacttggtaat |
5920211 |
T |
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| Q |
418 |
ctctctaatcaaagaatgaccaaaatgtctcatttgtatccatctattgttcacaataataaagatgtgtttgatatttgtcactt |
503 |
Q |
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| T |
5920210 |
ctctctaatcaaagaatgaccaaaatgtctcatttgtatccatctattgttcacaataataaagatgtgtgtgatatttgtcactt |
5920125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 18 - 503
Target Start/End: Complemental strand, 20324915 - 20324437
Alignment:
| Q |
18 |
atcaaatctgttcgtgttaatcttccaaataatacttctatcattgttcattttgctggtaatgttgttttcaatcctcagttttatcttaccaatgtgt |
117 |
Q |
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|||||| ||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | |
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| T |
20324915 |
atcaaacctgttcgagttaatcttcctaataaaacttctattattgttcattttgctggtaatgttgttttcactcctcaattttatcttaccaatgtat |
20324816 |
T |
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| Q |
118 |
tatattcaccattgtgtcagatgaatctcatgtctgttactaaactttgtgagtcattatcttgtgttttgaacttttctcatggcatgcaaatgccttg |
217 |
Q |
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| T |
20324815 |
tatattcacctttgtgtcaaatgaatcttctgtctgttgctaaactatgtgagtctttatcttgtgttcttaatttttcctatgaca----aatgcctta |
20324720 |
T |
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| Q |
218 |
tacatgaccaaacttcactgaagatgattggtttggctaatcaagtggctggtctttacatatatactgctgattctcatgttttttcaactagttttat |
317 |
Q |
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| T |
20324719 |
tacaggaccaaacttcattgaagatgattggtttggctaagcaagtggctggtctttacagatatactcctccttctgattttagttccactagtcttat |
20324620 |
T |
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| Q |
318 |
gcattcccccaataaatcttgtaatttttcttcttctatcagttgtaattcaagcaattgtattccagttactgccttatggcacttaaggcttggtcat |
417 |
Q |
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| T |
20324619 |
gcattctccaaataaatcttgtaatttttcttct---atcagttgtaattccaacaattgtattccagttgctgccttatggcattttaggcttggtcat |
20324523 |
T |
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| Q |
418 |
ctctctaatcaaagaatgaccaaaatgtctcatttgtatccatctattgttcacaataataaagatgtgtttgatatttgtcactt |
503 |
Q |
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| T |
20324522 |
ctctctaatcaaagaatgatcaaaatgtctcatttgtatccatctattgttcacaataatagagatgtgtgtgatatttgtcactt |
20324437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 15448198 - 15448234
Alignment:
| Q |
92 |
tcctcagttttatcttaccaatgtgttatattcacca |
128 |
Q |
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| T |
15448198 |
tcctcggttttaccttaccaatgtgttatattcacca |
15448234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 29369911 - 29369856
Alignment:
| Q |
27 |
gttcgtgttaatcttccaaataatacttctatcattgttcattttgctggtaatgt |
82 |
Q |
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| T |
29369911 |
gttcgtgttactttaccaaatggtacttctatcattgttcattatgctggtaatgt |
29369856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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